Os02g0594100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase ATN1.
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Os02g0594100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase ATN1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.18 | 0.195 | 12 | 0.763 | 0.564 | 0.369 | 0.0875 | 0.515 | 0.155 | 23.3 | 1.182 | 7491 | -- | -- |
| 17.16 | 0.193 | 12 | 0.725 | 0.569 | 0.482 | 0.096 | -- | 0.16 | 23.4 | 1.037 | 7495 | -- | -- |
| 17.19 | 0.193 | 12 | 0.731 | 0.562 | 0.416 | -- | 0.315 | 0.153 | 23.3 | 1 | 7488 | -- | -- |
| 17.19 | 0.193 | 12 | 0.721 | 0.565 | 0.486 | -- | -- | 0.156 | 23.3 | 0.9999 | 7487 | -- | -- |
| 36.72 | 0.282 | 12 | 0.78 | -- | 0.342 | -- | 0.582 | 0.16 | -- | 1.047 | 6275 | -- | -- |
| 21.56 | 0.218 | 12 | 0.872 | 0.569 | -- | 0.113 | -- | 0.123 | 23.3 | -- | -- | -- | -- |
| 21.61 | 0.218 | 12 | 0.867 | 0.568 | -- | -- | -- | 0.122 | 23.3 | -- | -- | -- | -- |
| 36.64 | 0.282 | 12 | 0.744 | -- | 0.498 | -- | -- | 0.158 | -- | 1.124 | 5166 | -- | -- |
| 25.6 | 0.236 | 12 | -- | 0.563 | 0.543 | -- | -- | 0.131 | 23.6 | 1.5 | 34568 | -- | -- |
| 41.82 | 0.302 | 12 | 0.882 | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
| 41.44 | 0.301 | 12.1 | -- | 0.577 | -- | -- | -- | 0.0257 | 23.4 | -- | -- | -- | -- |
| 45.65 | 0.315 | 12 | -- | -- | 0.484 | -- | -- | 0.144 | -- | 2.5 | 39969 | -- | -- |
| 62.34 | 0.369 | 12 | -- | -- | -- | -- | -- | 0.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 2 | 17.19 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 3 | 17.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 17.25 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 5 | 17.26 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 6 | 17.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 8 | 17.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 9 | 17.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 10 | 17.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 16 | 17.33 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 20 | 17.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 36 | 17.48 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 49 | 17.57 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 60 | 17.60 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 98 | 17.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 137 | 17.71 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 139 | 17.71 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 174 | 17.73 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 195 | 17.74 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 198 | 17.74 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 246 | 17.77 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 255 | 17.77 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 337 | 17.81 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 358 | 17.82 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 440 | 17.84 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 449 | 17.84 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 565 | 17.86 | atmosphere | 1010.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 776 | 17.88 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 957 | 17.90 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |