Os02g0592200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0592200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.73 | 0.452 | 9.2 | 0.555 | 0.751 | -1.07 | 0.461 | 4.29 | 0.0423 | 17.6 | 19 | 3785 | -- | -- |
| 109.69 | 0.488 | 9.3 | -0.0305 | 0.697 | -1.28 | 0.946 | -- | 0.0241 | 18.1 | 13.76 | 19713 | -- | -- |
| 93.08 | 0.449 | 9.2 | 0.573 | 0.756 | -1.06 | -- | 4.38 | 0.049 | 17.3 | 19.33 | 3777 | -- | -- |
| 107.73 | 0.483 | 9.31 | 0.00827 | 0.755 | -1.29 | -- | -- | -0.0136 | 17.1 | 11.67 | 21551 | -- | -- |
| 122.29 | 0.515 | 9.18 | 0.605 | -- | -1.11 | -- | 4.43 | 0.0497 | -- | 19.6 | 3930 | -- | -- |
| 131.41 | 0.537 | 9.41 | -1.05 | 0.775 | -- | 0.0617 | -- | -0.488 | 16.9 | -- | -- | -- | -- |
| 131.42 | 0.537 | 9.41 | -1.05 | 0.775 | -- | -- | -- | -0.488 | 16.9 | -- | -- | -- | -- |
| 137.43 | 0.546 | 9.3 | 0.00896 | -- | -1.33 | -- | -- | -0.00883 | -- | 12.16 | 21435 | -- | -- |
| 107.69 | 0.483 | 9.31 | -- | 0.765 | -1.29 | -- | -- | -0.00895 | 17.1 | 11.67 | 21014 | -- | -- |
| 163.05 | 0.597 | 9.41 | -1.08 | -- | -- | -- | -- | -0.508 | -- | -- | -- | -- | -- |
| 160.48 | 0.593 | 9.39 | -- | 0.794 | -- | -- | -- | -0.371 | 16.9 | -- | -- | -- | -- |
| 137.39 | 0.546 | 9.29 | -- | -- | -1.33 | -- | -- | -0.0153 | -- | 10.3 | 21424 | -- | -- |
| 193.74 | 0.65 | 9.38 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 84.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 3 | 84.14 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 8 | 86.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 9 | 86.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 10 | 87.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 11 | 87.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 13 | 87.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 16 | 87.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 51 | 88.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 108 | 89.97 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 111 | 90.07 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 140 | 90.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 149 | 90.72 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 154 | 90.80 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 169 | 90.99 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 189 | 91.27 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 198 | 91.35 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 203 | 91.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 219 | 91.51 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 253 | 91.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 271 | 91.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 279 | 91.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 280 | 91.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 291 | 91.98 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 303 | 92.04 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 304 | 92.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 354 | 92.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 365 | 92.26 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 368 | 92.27 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 381 | 92.33 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 388 | 92.36 | radiation | 10 | 720 | < th | dose independent | sin | 13 | NA |
| 414 | 92.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 418 | 92.46 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 438 | 92.50 | temperature | 15 | 43200 | < th | dose dependent | sin | 9 | NA |
| 465 | 92.56 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 476 | 92.58 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 542 | 92.74 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 550 | 92.75 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 657 | 92.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 763 | 93.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 876 | 93.31 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 905 | 93.35 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 924 | 93.41 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 927 | 93.41 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 972 | 93.53 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 981 | 93.56 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 18 |
| 987 | 93.58 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 16 |