Os02g0591000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0591000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.52 | 0.516 | 7.56 | 0.939 | 1.08 | -1.25 | -0.0498 | 2.78 | 0.222 | 21.9 | 10.28 | 4751 | -- | -- |
| 127.67 | 0.526 | 7.63 | 0.411 | 1.07 | -1.43 | -0.12 | -- | 0.166 | 22 | 5.842 | 7493 | -- | -- |
| 120.53 | 0.511 | 7.56 | 0.939 | 1.08 | -1.25 | -- | 2.77 | 0.221 | 21.9 | 10.21 | 4744 | -- | -- |
| 127.64 | 0.526 | 7.64 | 0.4 | 1.07 | -1.43 | -- | -- | 0.166 | 22 | 6.024 | 7475 | -- | -- |
| 173.47 | 0.617 | 7.58 | 0.534 | -- | -1.75 | -- | 3.96 | 0.153 | -- | 7.802 | 5877 | -- | -- |
| 161.57 | 0.596 | 7.72 | -0.332 | 1.05 | -- | -0.0948 | -- | -0.221 | 21.9 | -- | -- | -- | -- |
| 161.6 | 0.595 | 7.72 | -0.329 | 1.05 | -- | -- | -- | -0.221 | 21.9 | -- | -- | -- | -- |
| 186.8 | 0.639 | 7.65 | -0.012 | -- | -1.68 | -- | -- | 0.00221 | -- | 5.156 | 8754 | -- | -- |
| 129.72 | 0.53 | 7.67 | -- | 1.09 | -1.24 | -- | -- | 0.00522 | 22.1 | 9.991 | 5474 | -- | -- |
| 227.37 | 0.705 | 7.7 | -0.317 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 164.45 | 0.6 | 7.72 | -- | 1.05 | -- | -- | -- | -0.184 | 21.9 | -- | -- | -- | -- |
| 186.8 | 0.639 | 7.64 | -- | -- | -1.68 | -- | -- | 0.00397 | -- | 9.991 | 5474 | -- | -- |
| 230.02 | 0.708 | 7.69 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 2 | 113.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 4 | 113.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 5 | 113.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 16 | 115.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 18 | 115.11 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 16 |
| 21 | 115.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 25 | 115.39 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 37 | 115.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 41 | 115.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 48 | 115.61 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 22 |
| 50 | 115.62 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 78 | 115.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 82 | 115.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 89 | 115.78 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 90 | 115.78 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 92 | 115.80 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 93 | 115.80 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |
| 94 | 115.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 15 |
| 107 | 115.83 | wind | 3 | 43200 | > th | dose dependent | sin | 14 | NA |
| 134 | 115.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 135 | 115.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 153 | 115.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 154 | 115.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 158 | 115.91 | wind | 1 | 43200 | > th | dose dependent | no | NA | NA |
| 247 | 116.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 249 | 116.06 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 290 | 116.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 318 | 116.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 358 | 116.26 | wind | 9 | 43200 | < th | dose dependent | sin | 14 | NA |
| 408 | 116.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 422 | 116.37 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 521 | 116.57 | wind | 7 | 43200 | < th | dose dependent | sin | 1 | NA |
| 550 | 116.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 554 | 116.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 663 | 116.88 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 689 | 116.92 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 694 | 116.93 | wind | 5 | 43200 | < th | dose independent | sin | 14 | NA |
| 724 | 116.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 903 | 117.23 | wind | 5 | 43200 | > th | dose independent | sin | 14 | NA |
| 912 | 117.24 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |