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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0590700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0345) R2 : 0.32
β1 : 1.29 (0.126) R2dD : 0.161 R2D : 0.113
β2 : 0.869 (0.0883) R2dC : 0.145 R2C : 0.123
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.445 (0.0735) R2dN8 : 0.0733 R2N8 : 0.0164
σ : 0.647
deviance : 191.13
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.39 0.59 3.3 3.95 0.91 -100 1.44 612 0.454 19.6 1000 10 7 1
175.04 0.621 3.75 1.3 0.91 2.4 1.44 -- 0.454 19.6 1000 10 7 1
166.23 0.605 3.3 3.91 0.909 -100 -- 611 0.456 19.6 999.9 11 6.97 1.32
166.4 0.605 3.75 1.26 0.912 4.99 -- -- 0.457 19.6 998.1 19 7.99 1.66
210.22 0.679 3.28 3.9 -- -101 -- 611 0.44 -- 999.9 11 6.97 1.32
186.34 0.64 3.75 1.32 0.868 -- 1.31 -- 0.443 19.6 -- -- -- --
191.13 0.647 3.75 1.29 0.869 -- -- -- 0.445 19.6 -- -- -- --
210.93 0.679 3.72 1.25 -- 4.56 -- -- 0.442 -- 997.5 21 7.94 1.71
208.12 0.676 3.78 -- 0.904 5.18 -- -- 0.317 19.7 998.1 19 7.99 1.66
231.66 0.711 3.73 1.27 -- -- -- -- 0.432 -- -- -- -- --
234.72 0.717 3.78 -- 0.858 -- -- -- 0.302 19.7 -- -- -- --
252.01 0.742 3.75 -- -- 4.75 -- -- 0.304 -- 997.5 21 7.94 1.71
274.46 0.773 3.76 -- -- -- -- -- 0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.39 atmosphere 1000.0 10 < th dose independent rect. 7 1
8 160.39 atmosphere 1000.0 10 < th dose dependent rect. 7 1
44 174.74 wind 1.0 1440 < th dose independent rect. 12 1
45 174.74 humidity 80.0 4320 < th dose independent rect. 5 3
46 174.77 humidity 80.0 4320 > th dose independent rect. 4 4
48 174.88 temperature 25.0 4320 < th dose independent rect. 2 1
50 174.97 humidity 70.0 4320 > th dose independent rect. 21 6
54 175.21 wind 1.0 1440 > th dose independent rect. 12 1
55 175.28 humidity 70.0 4320 > th dose independent rect. 20 11
57 175.33 humidity 80.0 4320 < th dose dependent rect. 21 12
60 175.38 humidity 50.0 4320 > th dose independent rect. 16 1
62 175.40 wind 9.0 4320 > th dose dependent rect. 14 1
63 175.41 atmosphere 1000.0 10 < th dose independent rect. 4 5
66 175.45 humidity 70.0 4320 > th dose independent rect. 21 3
69 175.52 atmosphere 1000.0 270 < th dose independent rect. 4 1
70 175.52 atmosphere 1000.0 270 < th dose dependent rect. 4 1
73 175.55 atmosphere 1000.0 10 < th dose dependent rect. 4 5
74 175.65 humidity 80.0 4320 < th dose independent rect. 23 11
90 175.98 wind 9.0 4320 > th dose independent rect. 14 1
93 176.01 humidity 80.0 4320 < th dose dependent rect. 5 1
97 176.04 humidity 70.0 4320 < th dose independent rect. 20 11
98 176.05 temperature 20.0 4320 < th dose independent rect. 21 2
103 176.09 temperature 20.0 4320 > th dose independent rect. 21 2
122 176.23 humidity 80.0 4320 < th dose dependent rect. 3 5
123 176.25 wind 9.0 4320 < th dose independent rect. 14 1
143 176.46 humidity 80.0 4320 > th dose independent rect. 24 10
160 176.62 temperature 25.0 270 > th dose dependent rect. 4 1
192 176.93 wind 1.0 1440 < th dose dependent rect. 12 2
208 177.11 humidity 60.0 14400 < th dose independent rect. 6 1
210 177.11 humidity 60.0 14400 < th dose independent rect. 20 1
212 177.11 radiation 20.0 14400 > th dose independent rect. 17 1
263 177.11 humidity 60.0 14400 < th dose dependent rect. 6 1
265 177.11 humidity 60.0 14400 < th dose dependent rect. 20 1
267 177.11 radiation 20.0 14400 > th dose dependent rect. 17 1
322 177.18 atmosphere 1000.0 720 < th dose dependent rect. 20 2
337 177.26 humidity 80.0 4320 < th dose independent sin 8 NA
347 177.32 temperature 25.0 90 > th dose dependent rect. 17 15
348 177.34 atmosphere 1000.0 720 < th dose independent rect. 20 1
363 177.40 radiation 30.0 90 > th dose independent rect. 7 1
396 177.52 radiation 30.0 90 > th dose dependent rect. 7 1
412 177.53 atmosphere 995.0 43200 > th dose independent rect. 9 1
413 177.53 humidity 50.0 1440 > th dose independent rect. 9 5
415 177.53 humidity 80.0 4320 < th dose dependent sin 10 NA
418 177.55 atmosphere 1000.0 10 < th dose independent rect. 2 7
421 177.57 humidity 50.0 1440 > th dose independent rect. 21 17
424 177.60 wind 9.0 43200 > th dose independent rect. 8 1
425 177.60 atmosphere 995.0 43200 < th dose independent rect. 7 1
437 177.60 wind 9.0 43200 > th dose dependent rect. 8 1
438 177.60 atmosphere 995.0 43200 < th dose dependent rect. 7 1
453 177.62 radiation 40.0 1440 > th dose independent rect. 15 1
483 177.66 radiation 10.0 720 > th dose dependent rect. 17 14
491 177.70 humidity 50.0 1440 > th dose independent rect. 19 19
520 177.79 humidity 50.0 1440 > th dose independent rect. 1 13
524 177.80 humidity 70.0 4320 > th dose independent rect. 18 15
536 177.84 humidity 50.0 4320 < th dose dependent rect. 10 2
581 177.93 radiation 10.0 720 > th dose independent rect. 17 14
591 177.96 humidity 50.0 1440 > th dose independent rect. 4 10
603 177.99 temperature 15.0 4320 > th dose independent rect. 2 1
607 178.00 temperature 15.0 4320 < th dose independent rect. 2 1
608 178.00 precipitation 0.1 4320 > th dose independent rect. 7 1
611 178.00 humidity 50.0 1440 > th dose independent rect. 6 8
612 178.00 precipitation 0.1 4320 > th dose dependent rect. 7 1
613 178.00 precipitation 0.1 4320 > th dose dependent rect. 3 5
614 178.00 wind 1.0 1440 < th dose dependent rect. 9 6
615 178.01 precipitation 0.1 1440 > th dose independent rect. 23 1
618 178.01 precipitation 0.1 1440 > th dose dependent rect. 23 1
624 178.03 precipitation 0.1 4320 > th dose dependent rect. 3 3
637 178.06 wind 9.0 43200 > th dose dependent rect. 6 8
638 178.07 precipitation 0.1 4320 > th dose independent rect. 3 5
640 178.08 wind 9.0 43200 < th dose independent rect. 6 1
654 178.10 radiation 40.0 1440 < th dose independent rect. 15 12
661 178.12 precipitation 0.1 4320 < th dose independent rect. 7 1
662 178.12 wind 9.0 43200 < th dose independent rect. 6 4
663 178.12 humidity 60.0 14400 > th dose independent rect. 3 5
664 178.12 precipitation 0.1 4320 < th dose dependent rect. 7 1
673 178.14 precipitation 0.1 4320 > th dose independent rect. 3 3
679 178.14 wind 9.0 43200 > th dose dependent rect. 23 15
680 178.15 radiation 40.0 1440 < th dose independent rect. 15 1
681 178.15 precipitation 0.1 4320 < th dose independent rect. 3 5
684 178.15 precipitation 0.1 4320 < th dose dependent rect. 3 5
695 178.17 humidity 60.0 4320 > th dose independent rect. 11 1
713 178.20 wind 9.0 43200 > th dose dependent sin 6 NA
720 178.22 humidity 50.0 10 > th dose independent sin 5 NA
732 178.25 humidity 80.0 4320 > th dose independent sin 8 NA
749 178.28 atmosphere 1000.0 10 < th dose dependent rect. 2 7
753 178.29 wind 9.0 43200 < th dose independent rect. 8 2
756 178.29 precipitation 0.1 4320 < th dose independent rect. 3 3
770 178.29 precipitation 0.1 4320 < th dose dependent rect. 3 3
774 178.29 humidity 80.0 4320 < th dose dependent rect. 18 7
785 178.30 temperature 25.0 270 < th dose independent rect. 11 12
808 178.34 humidity 60.0 720 < th dose independent sin 6 NA
826 178.36 humidity 60.0 720 < th dose dependent rect. 10 3
857 178.41 humidity 60.0 720 < th dose dependent sin 7 NA
888 178.47 humidity 50.0 1440 > th dose independent rect. 13 1
892 178.47 radiation 10.0 720 > th dose dependent rect. 6 1
986 178.61 precipitation 0.1 4320 > th dose dependent rect. 24 8
987 178.62 radiation 40.0 90 > th dose independent rect. 9 2
996 178.63 radiation 10.0 720 > th dose independent rect. 6 1