Os02g0588600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0588600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.11 | 0.385 | 12 | -1.7 | 1.17 | -2.22 | 0.801 | -2.49 | -0.446 | 7.35 | 0.826 | 1419 | -- | -- |
| 70.75 | 0.392 | 12 | -1.94 | 1.19 | -1.67 | 0.742 | -- | -0.436 | 7.29 | 0.8264 | 1412 | -- | -- |
| 68.72 | 0.386 | 12 | -1.68 | 1.16 | -2.25 | -- | -2.54 | -0.448 | 7.24 | 0.7552 | 1426 | -- | -- |
| 71.84 | 0.395 | 12 | -1.92 | 1.27 | -1.67 | -- | -- | -0.445 | 7.55 | 0.8819 | 1388 | -- | -- |
| 132.03 | 0.535 | 12 | -1.62 | -- | -2.32 | -- | -2.74 | -0.391 | -- | 0.83 | 1467 | -- | -- |
| 102.38 | 0.474 | 12 | -1.53 | 1.14 | -- | 0.728 | -- | -0.263 | 6.93 | -- | -- | -- | -- |
| 103.75 | 0.477 | 12 | -1.52 | 1.14 | -- | -- | -- | -0.264 | 6.96 | -- | -- | -- | -- |
| 136.17 | 0.543 | 12 | -1.86 | -- | -1.67 | -- | -- | -0.428 | -- | 1.428 | 1468 | -- | -- |
| 156.81 | 0.583 | 12 | -- | 1.23 | -0.573 | -- | -- | -0.215 | 7.3 | 7.81 | 1351 | -- | -- |
| 172.17 | 0.613 | 12 | -1.5 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 164.66 | 0.6 | 11.9 | -- | 1.12 | -- | -- | -- | -0.0949 | 7.04 | -- | -- | -- | -- |
| 217.91 | 0.688 | 12 | -- | -- | -1.01 | -- | -- | -0.201 | -- | 2.755 | 1482 | -- | -- |
| 231.25 | 0.71 | 12 | -- | -- | -- | -- | -- | -0.077 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 2 | 64.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 55 | 65.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 142 | 67.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 144 | 67.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 186 | 68.07 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 197 | 68.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 264 | 68.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 276 | 68.31 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 324 | 68.44 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 381 | 68.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 482 | 70.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 483 | 70.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 487 | 70.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 493 | 70.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 501 | 70.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 504 | 70.76 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 588 | 71.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 596 | 71.48 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 598 | 71.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 624 | 71.66 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 631 | 71.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 639 | 71.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 649 | 71.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 674 | 72.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 685 | 72.18 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 716 | 72.34 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 760 | 72.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 791 | 72.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 891 | 72.76 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 965 | 72.91 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |