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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0587800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0199) R2 : 0.000341
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0165 (0.0419) R2dN8 : 0.000441 R2N8 : 0.000341
σ : 0.375
deviance : 64.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.09 0.361 3.33 0.151 0.186 -0.059 -0.0661 -1.47 0.0309 7.78 70 5929 -- --
61.47 0.365 3.34 0.104 0.202 -0.227 -0.118 -- -0.0695 7.4 85.8 7643 -- --
59.1 0.358 3.33 0.149 0.186 -0.0598 -- -1.47 0.0306 7.84 70.22 5930 -- --
61.49 0.365 3.35 0.0961 0.201 -0.226 -- -- -0.0722 7.52 85.91 7643 -- --
60.98 0.364 3.33 0.15 -- -0.0456 -- -1.47 0.0365 -- 70.14 5930 -- --
62.43 0.37 3.32 0.0613 0.185 -- -0.0976 -- 0.0203 7.52 -- -- -- --
62.45 0.37 3.32 0.0592 0.185 -- -- -- 0.0206 7.64 -- -- -- --
63.34 0.371 3.35 0.0958 -- -0.216 -- -- -0.0694 -- 86 7228 -- --
61.73 0.366 3.34 -- 0.2 -0.204 -- -- -0.0702 7.5 85.99 7654 -- --
64.29 0.375 3.33 0.0617 -- -- -- -- 0.0234 -- -- -- -- --
62.55 0.37 3.33 -- 0.186 -- -- -- 0.014 7.62 -- -- -- --
63.59 0.371 3.35 -- -- -0.196 -- -- -0.0733 -- 85.91 7233 -- --
64.4 0.375 3.33 -- -- -- -- -- 0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.03 humidity 80.0 10 < th dose independent rect. 6 2
3 55.07 radiation 10.0 30 > th dose independent rect. 7 1
6 55.29 humidity 80.0 10 < th dose independent rect. 23 9
34 56.68 radiation 10.0 10 > th dose independent rect. 16 16
38 57.20 atmosphere 1000.0 30 > th dose independent rect. 3 23
39 57.32 atmosphere 1005.0 10 > th dose dependent rect. 2 2
40 57.36 atmosphere 1005.0 90 > th dose dependent rect. 2 1
41 57.41 temperature 25.0 30 > th dose independent rect. 7 1
62 57.85 radiation 1.0 43200 < th dose dependent rect. 3 1
64 57.93 temperature 25.0 90 > th dose dependent rect. 1 1
65 57.98 temperature 25.0 90 > th dose independent rect. 1 1
67 58.07 humidity 80.0 14400 < th dose dependent rect. 3 6
84 58.43 atmosphere 1010.0 30 < th dose dependent rect. 2 1
89 58.45 wind 3.0 30 < th dose independent rect. 2 1
94 58.46 wind 9.0 1440 < th dose independent rect. 3 1
95 58.46 temperature 10.0 1440 > th dose independent rect. 3 1
98 58.46 temperature 30.0 1440 < th dose independent rect. 3 1
102 58.46 humidity 50.0 1440 > th dose independent rect. 3 1
111 58.46 atmosphere 995.0 1440 > th dose independent rect. 3 1
112 58.46 radiation 1.0 1440 < th dose independent rect. 3 1
132 58.46 temperature 10.0 1440 > th dose independent rect. 4 23
148 58.47 wind 3.0 30 < th dose dependent rect. 2 1
154 58.48 temperature 10.0 30 > th dose independent rect. 2 1
156 58.48 temperature 30.0 30 < th dose independent rect. 2 1
157 58.48 humidity 50.0 30 > th dose independent rect. 2 1
160 58.48 humidity 90.0 30 > th dose independent rect. 2 1
161 58.48 atmosphere 995.0 30 > th dose independent rect. 2 1
162 58.48 atmosphere 1005.0 30 > th dose independent rect. 2 1
163 58.48 atmosphere 1010.0 30 < th dose independent rect. 2 1
165 58.48 radiation 1.0 30 < th dose independent rect. 2 1
170 58.48 precipitation 0.1 30 < th dose independent rect. 2 1
171 58.48 temperature 10.0 30 > th dose independent rect. 3 23
172 58.48 humidity 50.0 30 > th dose dependent rect. 2 1
176 58.48 radiation 1.0 30 < th dose dependent rect. 2 1
181 58.48 precipitation 0.1 30 < th dose dependent rect. 2 1
183 58.49 atmosphere 1000.0 30 > th dose independent rect. 8 23
195 58.53 wind 1.0 30 > th dose independent rect. 2 1
196 58.53 temperature 30.0 30 < th dose dependent rect. 2 1
198 58.54 humidity 90.0 10 < th dose dependent rect. 7 1
200 58.56 humidity 70.0 14400 > th dose independent rect. 8 1
219 58.62 precipitation 0.1 30 < th dose independent rect. 3 23
221 58.62 precipitation 0.1 30 < th dose dependent rect. 3 23
255 58.64 humidity 90.0 90 < th dose dependent rect. 1 7
262 58.68 humidity 80.0 14400 < th dose dependent rect. 22 12
271 58.76 humidity 70.0 14400 < th dose independent rect. 8 1
276 58.80 humidity 70.0 14400 > th dose independent rect. 5 4
288 58.82 wind 9.0 30 < th dose independent rect. 3 23
297 58.86 atmosphere 1005.0 30 > th dose independent rect. 7 1
305 58.91 wind 5.0 14400 < th dose dependent rect. 10 2
308 58.95 humidity 90.0 90 < th dose independent rect. 2 1
314 58.99 humidity 70.0 14400 < th dose independent rect. 7 3
356 59.05 wind 7.0 14400 < th dose independent rect. 9 1
366 59.09 wind 3.0 14400 > th dose independent rect. 10 2
367 59.11 wind 5.0 14400 < th dose independent rect. 9 6
374 59.15 wind 5.0 14400 < th dose independent rect. 11 1
379 59.16 wind 5.0 10 < th dose dependent rect. 7 1
380 59.16 humidity 50.0 14400 > th dose dependent rect. 8 1
389 59.20 humidity 70.0 4320 > th dose independent rect. 10 1
391 59.20 wind 5.0 14400 > th dose independent rect. 9 6
392 59.21 humidity 50.0 30 > th dose independent rect. 3 23
393 59.21 radiation 10.0 30 < th dose independent rect. 3 23
399 59.22 wind 1.0 14400 > th dose dependent rect. 10 2
402 59.23 wind 1.0 14400 < th dose dependent rect. 6 1
404 59.24 wind 3.0 30 < th dose independent rect. 7 1
410 59.25 atmosphere 995.0 720 > th dose independent rect. 23 16
414 59.26 temperature 20.0 10 > th dose dependent rect. 7 1
416 59.26 humidity 60.0 14400 < th dose dependent rect. 12 1
417 59.27 humidity 70.0 4320 < th dose independent rect. 10 1
421 59.28 wind 5.0 14400 > th dose independent rect. 9 8
426 59.29 radiation 1.0 10 > th dose dependent rect. 7 1
444 59.35 wind 1.0 30 > th dose independent rect. 7 1
480 59.36 wind 3.0 14400 > th dose dependent rect. 9 6
485 59.37 wind 1.0 14400 < th dose dependent rect. 2 1
503 59.42 wind 7.0 14400 > th dose independent rect. 9 1
514 59.43 humidity 50.0 14400 > th dose independent rect. 15 1
526 59.44 humidity 50.0 4320 > th dose dependent rect. 11 1
532 59.45 wind 1.0 14400 > th dose independent rect. 4 3
542 59.46 wind 1.0 14400 < th dose independent rect. 4 3
549 59.47 wind 3.0 14400 > th dose independent rect. 19 1
552 59.47 wind 1.0 14400 < th dose dependent rect. 4 3
569 59.49 radiation 10.0 10 < th dose dependent rect. 3 23
603 59.52 wind 7.0 14400 < th dose dependent rect. 9 6
621 59.54 temperature 30.0 1440 > th dose independent rect. 14 21
643 59.55 temperature 30.0 1440 < th dose independent rect. 15 19
660 59.55 humidity 50.0 4320 > th dose dependent rect. 23 14
705 59.58 wind 9.0 1440 < th dose independent rect. 8 1
708 59.58 temperature 10.0 1440 > th dose independent rect. 8 1
713 59.58 humidity 50.0 1440 > th dose independent rect. 8 1
716 59.58 atmosphere 995.0 1440 > th dose independent rect. 8 1
719 59.58 atmosphere 1015.0 1440 < th dose independent rect. 8 1
720 59.58 precipitation 0.1 30 < th dose independent rect. 7 1
735 59.58 temperature 10.0 1440 > th dose independent rect. 9 23
738 59.58 humidity 80.0 14400 < th dose dependent sin 8 NA
739 59.58 precipitation 0.1 30 < th dose dependent rect. 7 1
749 59.58 humidity 50.0 4320 > th dose dependent rect. 3 10
753 59.59 wind 1.0 14400 < th dose independent rect. 6 1
756 59.59 temperature 10.0 30 > th dose independent rect. 7 1
758 59.59 temperature 30.0 30 < th dose independent rect. 7 1
759 59.59 humidity 50.0 30 > th dose independent rect. 7 1
762 59.59 atmosphere 995.0 30 > th dose independent rect. 7 1
763 59.59 atmosphere 1015.0 30 < th dose independent rect. 7 1
776 59.59 temperature 10.0 30 > th dose independent rect. 8 23
794 59.60 humidity 70.0 4320 > th dose independent sin 5 NA
801 59.60 atmosphere 1000.0 720 > th dose independent rect. 3 8
805 59.60 temperature 30.0 1440 > th dose dependent rect. 15 1
807 59.60 atmosphere 995.0 30 > th dose dependent rect. 7 1
855 59.61 wind 1.0 14400 > th dose independent rect. 4 7
856 59.61 wind 1.0 14400 < th dose independent rect. 4 7
891 59.62 wind 3.0 14400 < th dose independent rect. 19 1
947 59.63 wind 9.0 30 < th dose independent rect. 8 23
981 59.64 wind 5.0 14400 > th dose independent rect. 23 18
984 59.64 humidity 50.0 4320 > th dose dependent sin 5 NA
985 59.64 humidity 60.0 14400 < th dose dependent sin 1 NA