Os02g0587300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0587300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.04 | 0.835 | 9.24 | 1.5 | 3.48 | -1.43 | -0.367 | 0.514 | -0.325 | 7.52 | 19.93 | 1423 | 4.95 | 1.55 |
| 315.06 | 0.827 | 9.24 | 1.26 | 3.47 | -1.41 | -0.321 | -- | -0.339 | 7.54 | 19.97 | 1417 | 5.38 | 1.11 |
| 316.39 | 0.828 | 9.24 | 1.5 | 3.48 | -1.43 | -- | 0.53 | -0.325 | 7.52 | 19.93 | 1421 | 4.95 | 1.55 |
| 315.3 | 0.827 | 9.24 | 1.24 | 3.45 | -1.43 | -- | -- | -0.341 | 7.53 | 19.96 | 1417 | 5.4 | 1.1 |
| 833.21 | 1.34 | 9.29 | 1.57 | -- | -1.81 | -- | -0.185 | -0.242 | -- | 20.14 | 1208 | 5.87 | 1.72 |
| 445 | 0.989 | 9.37 | 0.766 | 3.54 | -- | -0.0733 | -- | -0.873 | 7.55 | -- | -- | -- | -- |
| 445.02 | 0.988 | 9.37 | 0.765 | 3.54 | -- | -- | -- | -0.873 | 7.55 | -- | -- | -- | -- |
| 768.89 | 1.29 | 9.3 | 1.56 | -- | -2.08 | -- | -- | -0.262 | -- | 21.92 | 1182 | 6.25 | 2.78 |
| 347 | 0.868 | 9.28 | -- | 3.54 | -1.28 | -- | -- | -0.44 | 7.41 | 19.59 | 1413 | 5.47 | 0.699 |
| 1115.87 | 1.56 | 9.45 | 0.816 | -- | -- | -- | -- | -0.818 | -- | -- | -- | -- | -- |
| 460.42 | 1 | 9.39 | -- | 3.55 | -- | -- | -- | -0.958 | 7.53 | -- | -- | -- | -- |
| 469.58 | 1.01 | 9.38 | -- | -- | -4.21 | -- | -- | -0.564 | -- | 22.4 | 735 | 6.17 | 14 |
| 1133.45 | 1.57 | 9.47 | -- | -- | -- | -- | -- | -0.909 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 318.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 319.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 9 | 322.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 17 | 324.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 22 | 325.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 162 | 330.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 238 | 332.92 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 250 | 333.29 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 256 | 333.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 290 | 334.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 303 | 334.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 333 | 334.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 344 | 335.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 383 | 335.82 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 406 | 336.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 460 | 336.81 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 467 | 336.94 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 594 | 338.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 739 | 339.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 754 | 339.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 804 | 339.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 985 | 340.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 994 | 340.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |