Os02g0587000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine rich protein (Fragment).
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Os02g0587000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine rich protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.32 | 0.634 | 2.42 | 2.12 | 0.15 | -10.5 | 0.469 | 66 | 0.00851 | 11 | 999.9 | 10 | -- | -- |
| 189.42 | 0.646 | 2.76 | 0.161 | 0.166 | 0.713 | 0.521 | -- | 0.0035 | 11.2 | 999.9 | 10 | -- | -- |
| 182.58 | 0.634 | 2.4 | 2.24 | 0.148 | -11.1 | -- | 69.7 | 0.0108 | 10.4 | 999.9 | 10 | -- | -- |
| 188.74 | 0.644 | 2.76 | 0.167 | 0.161 | 0.682 | -- | -- | 0.0199 | 10.4 | 1003 | 14 | -- | -- |
| 183.92 | 0.635 | 2.39 | 2.28 | -- | -11.4 | -- | 71.1 | 0.0104 | -- | 999.9 | 10 | -- | -- |
| 193.59 | 0.652 | 2.77 | 0.216 | 0.168 | -- | 0.528 | -- | -0.018 | 11.3 | -- | -- | -- | -- |
| 194.75 | 0.654 | 2.77 | 0.237 | 0.168 | -- | -- | -- | -0.0166 | 10.7 | -- | -- | -- | -- |
| 190.32 | 0.645 | 2.76 | 0.164 | -- | 0.69 | -- | -- | 0.0197 | -- | 1003 | 14 | -- | -- |
| 189.46 | 0.645 | 2.76 | -- | 0.16 | 0.716 | -- | -- | 0.00344 | 10.3 | 1003 | 14 | -- | -- |
| 196.49 | 0.655 | 2.77 | 0.233 | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
| 196.23 | 0.655 | 2.77 | -- | 0.166 | -- | -- | -- | -0.043 | 10.6 | -- | -- | -- | -- |
| 191.02 | 0.646 | 2.77 | -- | -- | 0.723 | -- | -- | 0.0037 | -- | 1003 | 14 | -- | -- |
| 197.93 | 0.657 | 2.78 | -- | -- | -- | -- | -- | -0.0434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.05 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 4 | 171.05 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 171.51 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 9 | 171.75 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 14 | 172.07 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 19 | 174.01 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 48 | 175.37 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 58 | 176.24 | wind | 3.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 65 | 176.61 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 24 | 15 |
| 71 | 177.07 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 78 | 177.21 | wind | 3.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 109 | 178.48 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 116 | 178.71 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 137 | 179.24 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 168 | 179.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 212 | 180.29 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 24 | 15 |
| 213 | 180.29 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 238 | 180.59 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 279 | 180.59 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 321 | 180.61 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 2 |
| 325 | 180.63 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 331 | 180.66 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 14 |
| 334 | 180.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 1 |
| 336 | 180.67 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 347 | 180.70 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 12 | 2 |
| 353 | 180.71 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 360 | 180.71 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 412 | 181.05 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 437 | 181.19 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 442 | 181.21 | atmosphere | 1000.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 443 | 181.21 | atmosphere | 1000.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 460 | 181.28 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 493 | 181.37 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 494 | 181.38 | atmosphere | 995.0 | 720 | < th | dose independent | sin | 6 | NA |
| 507 | 181.44 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 522 | 181.48 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 540 | 181.57 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 7 | NA |
| 554 | 181.61 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 12 | 2 |
| 600 | 181.72 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 635 | 181.82 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 708 | 182.05 | atmosphere | 995.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 725 | 182.13 | humidity | 60.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 757 | 182.21 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 14 | 22 |
| 769 | 182.26 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 18 |
| 785 | 182.29 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 810 | 182.35 | atmosphere | 1000.0 | 10 | < th | dose dependent | no | NA | NA |
| 843 | 182.41 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 982 | 182.81 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 22 |