Os02g0586400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small GTP binding protein Rab2.
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Os02g0586400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small GTP binding protein Rab2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.88 | 0.265 | 12.8 | 0.0674 | 0.304 | -0.547 | -0.689 | -1.22 | 0.264 | 3.16 | 16.62 | 130 | -- | -- |
| 33.45 | 0.269 | 12.8 | 0.0698 | 0.297 | -0.483 | -0.288 | -- | 0.267 | 3.36 | 10.94 | 127 | -- | -- |
| 33 | 0.268 | 12.8 | 0.0793 | 0.323 | -0.527 | -- | -0.758 | 0.266 | 3.21 | 18.05 | 128 | -- | -- |
| 33.68 | 0.27 | 12.8 | 0.0696 | 0.305 | -0.47 | -- | -- | 0.266 | 3.35 | 11.83 | 127 | -- | -- |
| 35.07 | 0.276 | 12.8 | 0.0964 | -- | -0.654 | -- | -0.268 | 0.289 | -- | 0.3432 | 200 | -- | -- |
| 36.74 | 0.284 | 12.8 | 0.0583 | 0.494 | -- | -0.249 | -- | 0.24 | 2.52 | -- | -- | -- | -- |
| 36.96 | 0.285 | 12.8 | 0.0648 | 0.493 | -- | -- | -- | 0.242 | 2.47 | -- | -- | -- | -- |
| 35.14 | 0.276 | 12.8 | 0.091 | -- | -0.653 | -- | -- | 0.29 | -- | -0.9186 | 235 | -- | -- |
| 33.8 | 0.271 | 12.8 | -- | 0.308 | -0.468 | -- | -- | 0.258 | 3.32 | 12.33 | 127 | -- | -- |
| 51.28 | 0.335 | 12.8 | 0.0857 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 37.07 | 0.285 | 12.8 | -- | 0.494 | -- | -- | -- | 0.235 | 2.47 | -- | -- | -- | -- |
| 35.36 | 0.277 | 12.8 | -- | -- | -0.653 | -- | -- | 0.28 | -- | -12.71 | 235 | -- | -- |
| 51.47 | 0.335 | 12.8 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.81 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 2 | 26.82 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 4 | 27.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 5 | 27.01 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 8 | 27.19 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 7 |
| 12 | 27.83 | temperature | 20.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 13 | 28.25 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 37 | 29.57 | temperature | 20.0 | 90 | < th | dose independent | rect. | 14 | 2 |
| 71 | 30.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 6 |
| 101 | 31.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 105 | 31.40 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 111 | 31.49 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 118 | 31.54 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 17 |
| 126 | 31.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 127 | 31.57 | radiation | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 129 | 31.60 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 133 | 31.62 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 164 | 31.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 170 | 31.68 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 189 | 31.72 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 196 | 31.74 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 198 | 31.75 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 203 | 31.77 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 210 | 31.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 215 | 31.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 216 | 31.81 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 218 | 31.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 221 | 31.81 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 239 | 31.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 268 | 31.86 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 272 | 31.87 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 293 | 31.89 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 294 | 31.89 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 5 |
| 318 | 31.92 | radiation | 20.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 319 | 31.92 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 342 | 31.94 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 343 | 31.94 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 352 | 31.96 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 353 | 31.96 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 364 | 31.97 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 383 | 31.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 386 | 31.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 404 | 31.99 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 406 | 32.00 | temperature | 20.0 | 90 | > th | dose independent | rect. | 14 | 19 |
| 429 | 32.02 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 16 |
| 466 | 32.05 | radiation | 20.0 | 270 | > th | dose independent | sin | 7 | NA |
| 467 | 32.05 | radiation | 20.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 473 | 32.05 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 477 | 32.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 481 | 32.07 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 489 | 32.07 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 490 | 32.07 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 491 | 32.07 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 507 | 32.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 508 | 32.09 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 509 | 32.09 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 512 | 32.09 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 519 | 32.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 549 | 32.12 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 554 | 32.12 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 566 | 32.13 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 568 | 32.13 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 600 | 32.14 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 605 | 32.14 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 615 | 32.14 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 627 | 32.15 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 635 | 32.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 656 | 32.16 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 660 | 32.17 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 662 | 32.17 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 665 | 32.17 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 690 | 32.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 711 | 32.18 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 734 | 32.18 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 776 | 32.20 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 821 | 32.21 | radiation | 20.0 | 90 | > th | dose dependent | no | NA | NA |