Os02g0583900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0583900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.83 | 0.786 | 5.6 | 1.47 | 1.64 | 1.86 | 1.01 | 1.97 | 0.365 | 18.1 | 20.91 | 1392 | -- | -- |
| 287.85 | 0.79 | 5.64 | 1.22 | 1.69 | 1.59 | 1.45 | -- | 0.311 | 18 | 21.4 | 1317 | -- | -- |
| 282.25 | 0.782 | 5.6 | 1.45 | 1.65 | 1.86 | -- | 1.93 | 0.365 | 18.2 | 20.94 | 1377 | -- | -- |
| 289.2 | 0.792 | 5.66 | 1.08 | 1.65 | 1.57 | -- | -- | 0.267 | 18 | 21.24 | 1275 | -- | -- |
| 400.93 | 0.933 | 5.58 | 1.45 | -- | 1.64 | -- | 1.33 | 0.334 | -- | 20.9 | 504 | -- | -- |
| 355.6 | 0.884 | 5.56 | 1.74 | 1.61 | -- | 1.13 | -- | 0.689 | 18.2 | -- | -- | -- | -- |
| 358.71 | 0.887 | 5.56 | 1.73 | 1.62 | -- | -- | -- | 0.692 | 18.3 | -- | -- | -- | -- |
| 406.64 | 0.939 | 5.64 | 1.03 | -- | 1.65 | -- | -- | 0.26 | -- | 21 | 527 | -- | -- |
| 313.3 | 0.824 | 5.71 | -- | 1.63 | 2.03 | -- | -- | 0.0839 | 18.1 | 21.1 | 1339 | -- | -- |
| 494.63 | 1.04 | 5.53 | 1.68 | -- | -- | -- | -- | 0.657 | -- | -- | -- | -- | -- |
| 437.4 | 0.978 | 5.61 | -- | 1.59 | -- | -- | -- | 0.5 | 18.4 | -- | -- | -- | -- |
| 437.05 | 0.974 | 5.64 | -- | -- | 1.87 | -- | -- | 0.122 | -- | 20.7 | 510 | -- | -- |
| 569.48 | 1.11 | 5.58 | -- | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 281.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 3 | 282.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 7 | 282.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 12 | 282.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 34 | 283.33 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 64 | 284.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 69 | 284.13 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 112 | 284.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 136 | 285.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 137 | 285.26 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 153 | 285.44 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 154 | 285.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 177 | 285.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 196 | 285.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 251 | 286.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 315 | 287.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 318 | 287.07 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 345 | 287.31 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 363 | 287.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 382 | 287.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 385 | 287.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 436 | 288.27 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 455 | 288.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 466 | 288.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 468 | 288.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 477 | 288.88 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 499 | 289.32 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 531 | 289.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 555 | 290.15 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 574 | 290.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 640 | 291.73 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 650 | 291.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 664 | 292.13 | wind | 3 | 14400 | < th | dose dependent | sin | 9 | NA |
| 704 | 292.69 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 724 | 292.96 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 738 | 293.11 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 834 | 294.27 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 836 | 294.28 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 893 | 294.81 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 904 | 294.90 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 980 | 295.50 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |