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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0583500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0252) R2 : 0.00156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0449 (0.0532) R2dN8 : 0.00202 R2N8 : 0.00156
σ : 0.475
deviance : 103.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.6 0.462 3.13 -0.0504 0.0277 0.959 -0.254 0.111 0.0716 2.67 50.34 10 -- --
96.47 0.457 3.13 -0.0392 0.0251 0.959 -0.297 -- 0.0732 2.4 50.41 9 -- --
96.51 0.458 3.13 -0.0221 0.0377 1.01 -- 0.538 0.0756 4.95 50.58 9 -- --
96.75 0.458 3.13 -0.0325 0.0365 0.93 -- -- 0.0733 5.42 50.41 9 -- --
96.56 0.458 3.13 -0.0415 -- 1.02 -- 0.616 0.0723 -- 50.51 9 -- --
102.97 0.476 3.14 -0.0918 0.0912 -- 0.118 -- 0.0353 10.9 -- -- -- --
103.03 0.475 3.14 -0.0874 0.0915 -- -- -- 0.0354 10.5 -- -- -- --
96.82 0.458 3.13 -0.0313 -- 0.926 -- -- 0.0745 -- 50.41 9 -- --
96.78 0.458 3.13 -- 0.0348 0.938 -- -- 0.0772 5.35 50.41 9 -- --
103.54 0.475 3.14 -0.089 -- -- -- -- 0.035 -- -- -- -- --
103.23 0.475 3.13 -- 0.092 -- -- -- 0.0451 10.6 -- -- -- --
96.84 0.458 3.13 -- -- 0.933 -- -- 0.0781 -- 50.41 9 -- --
103.75 0.475 3.14 -- -- -- -- -- 0.0449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.27 radiation 40.0 10 > th dose independent rect. 11 1
2 96.27 radiation 40.0 10 > th dose dependent rect. 11 1
27 96.77 radiation 10.0 10 > th dose dependent rect. 11 1
135 98.49 radiation 1.0 10 > th dose dependent rect. 18 18
136 98.50 humidity 90.0 270 > th dose independent rect. 24 8
138 98.51 radiation 1.0 10 > th dose dependent rect. 5 7
153 98.61 radiation 40.0 1440 > th dose dependent rect. 10 1
181 98.75 temperature 25.0 4320 > th dose dependent rect. 4 2
229 98.93 humidity 80.0 30 < th dose independent rect. 11 1
232 98.95 humidity 90.0 720 < th dose dependent rect. 16 2
234 98.97 temperature 25.0 4320 > th dose independent rect. 4 2
235 98.99 humidity 90.0 30 < th dose dependent rect. 11 1
237 99.01 temperature 15.0 30 > th dose dependent rect. 12 10
260 99.04 humidity 90.0 270 > th dose dependent rect. 23 9
271 99.08 humidity 70.0 10 > th dose dependent rect. 13 14
282 99.11 radiation 40.0 10 > th dose dependent sin 7 NA
283 99.11 radiation 10.0 1440 > th dose dependent rect. 10 1
285 99.13 temperature 25.0 90 > th dose independent rect. 5 1
286 99.13 humidity 80.0 720 < th dose independent rect. 17 1
287 99.13 temperature 25.0 270 > th dose dependent rect. 5 1
292 99.15 radiation 40.0 1440 < th dose independent rect. 10 1
312 99.22 radiation 10.0 4320 < th dose independent rect. 13 4
314 99.22 humidity 50.0 720 > th dose dependent rect. 11 13
316 99.23 humidity 80.0 10 > th dose independent rect. 13 14
354 99.27 humidity 90.0 270 > th dose independent sin 8 NA
369 99.29 radiation 40.0 1440 > th dose dependent rect. 15 21
371 99.30 radiation 10.0 720 < th dose independent rect. 13 11
374 99.31 radiation 10.0 720 < th dose independent rect. 15 9
382 99.32 wind 1.0 10 > th dose dependent rect. 11 1
409 99.33 radiation 10.0 4320 < th dose dependent rect. 13 1
424 99.35 humidity 90.0 270 > th dose dependent sin 8 NA
433 99.36 humidity 50.0 10 > th dose dependent sin 16 NA
437 99.36 temperature 10.0 30 > th dose dependent rect. 12 23
438 99.37 humidity 70.0 1440 > th dose independent rect. 10 4
451 99.38 wind 3.0 30 > th dose independent rect. 6 1
471 99.38 wind 3.0 30 > th dose independent rect. 12 23
474 99.39 humidity 80.0 30 < th dose independent rect. 1 3
494 99.40 atmosphere 1010.0 10 < th dose independent rect. 6 1
495 99.40 humidity 60.0 1440 < th dose independent rect. 11 9
510 99.40 humidity 80.0 30 < th dose dependent rect. 1 3
518 99.40 humidity 90.0 270 > th dose dependent rect. 13 19
524 99.41 radiation 10.0 720 < th dose independent rect. 11 13
533 99.41 humidity 90.0 270 > th dose dependent rect. 15 17
559 99.43 humidity 60.0 1440 < th dose independent sin 16 NA
561 99.43 atmosphere 1000.0 10 > th dose independent rect. 11 1
572 99.45 humidity 80.0 30 < th dose independent rect. 1 1
593 99.45 humidity 80.0 30 < th dose dependent rect. 1 1
601 99.45 wind 1.0 270 < th dose dependent rect. 8 15
618 99.47 wind 9.0 10 < th dose independent rect. 12 23
622 99.47 humidity 80.0 1440 < th dose dependent rect. 11 2
627 99.47 humidity 80.0 30 < th dose dependent rect. 12 23
633 99.48 wind 1.0 1440 < th dose dependent rect. 5 1
635 99.48 humidity 90.0 30 < th dose dependent rect. 12 10
646 99.49 radiation 10.0 1440 > th dose independent rect. 10 2
654 99.49 humidity 90.0 270 > th dose independent rect. 12 20
656 99.49 atmosphere 1010.0 30 < th dose dependent rect. 6 1
671 99.51 humidity 50.0 270 > th dose dependent sin 18 NA
677 99.51 humidity 90.0 30 < th dose dependent rect. 12 13
679 99.51 radiation 40.0 720 < th dose dependent rect. 10 14
682 99.52 wind 3.0 10 > th dose independent rect. 11 1
687 99.52 radiation 30.0 720 < th dose independent rect. 12 21
689 99.52 humidity 50.0 1440 > th dose dependent rect. 11 2
693 99.52 humidity 90.0 30 < th dose dependent rect. 12 16
727 99.53 humidity 70.0 10 > th dose dependent rect. 8 19
730 99.54 wind 1.0 1440 < th dose independent rect. 5 1
734 99.54 humidity 90.0 10 < th dose independent rect. 12 10
748 99.54 humidity 50.0 10 > th dose dependent rect. 7 23
749 99.55 humidity 60.0 1440 > th dose independent rect. 10 10
771 99.55 radiation 10.0 4320 < th dose dependent rect. 16 1
772 99.55 temperature 25.0 90 > th dose dependent rect. 2 5
778 99.55 humidity 90.0 270 > th dose dependent rect. 24 21
794 99.56 wind 1.0 270 < th dose dependent rect. 8 2
799 99.56 humidity 90.0 270 > th dose dependent rect. 24 14
808 99.57 temperature 25.0 4320 < th dose independent rect. 4 1
814 99.57 humidity 90.0 30 < th dose dependent rect. 1 11
827 99.58 humidity 60.0 1440 > th dose independent sin 16 NA
856 99.59 wind 9.0 43200 > th dose independent rect. 24 12
867 99.59 humidity 70.0 90 < th dose independent rect. 12 22
874 99.59 humidity 90.0 10 < th dose dependent rect. 17 11
880 99.60 humidity 70.0 1440 < th dose independent rect. 10 3
883 99.60 humidity 60.0 720 > th dose independent rect. 15 9
892 99.60 wind 9.0 4320 > th dose dependent rect. 3 11
902 99.61 temperature 25.0 90 < th dose independent rect. 2 7
904 99.61 wind 9.0 43200 > th dose independent rect. 2 10
923 99.61 wind 9.0 43200 > th dose dependent rect. 10 2
925 99.61 humidity 60.0 1440 < th dose dependent rect. 15 4
947 99.61 wind 9.0 43200 > th dose dependent rect. 21 18
952 99.62 humidity 70.0 1440 < th dose independent rect. 9 5
963 99.62 humidity 60.0 1440 < th dose independent rect. 15 23
964 99.62 wind 9.0 43200 > th dose dependent sin 4 NA
967 99.62 humidity 80.0 720 < th dose dependent sin 14 NA
968 99.62 humidity 90.0 10 < th dose dependent sin 16 NA
983 99.62 humidity 90.0 30 < th dose dependent rect. 22 14
984 99.62 radiation 20.0 1440 > th dose dependent rect. 16 16
987 99.63 precipitation 0.1 1440 < th dose independent rect. 12 1
993 99.63 temperature 25.0 30 > th dose independent rect. 12 9
996 99.63 radiation 30.0 720 < th dose independent rect. 12 11