Os02g0583300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : En/Spm-like transposon proteins family protein.
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Os02g0583300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : En/Spm-like transposon proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.45 | 0.263 | 3.15 | 0.0319 | 0.13 | 0.192 | -0.205 | 1.14 | -0.0182 | 6.32 | 41.82 | 99 | -- | -- |
| 32.76 | 0.269 | 3.14 | 0.0282 | 0.125 | 0.12 | -0.22 | -- | -0.00815 | 5.73 | 41.82 | 99 | -- | -- |
| 31.54 | 0.262 | 3.15 | 0.0319 | 0.13 | 0.192 | -- | 1.14 | -0.0182 | 6 | 41.82 | 99 | -- | -- |
| 32.88 | 0.269 | 3.14 | 0.0273 | 0.124 | 0.115 | -- | -- | -0.00719 | 6.01 | 41.82 | 99 | -- | -- |
| 32.41 | 0.265 | 3.15 | 0.0304 | -- | 0.181 | -- | 1.14 | -0.0136 | -- | 41.87 | 99 | -- | -- |
| 33.22 | 0.27 | 3.14 | 0.0325 | 0.127 | -- | -0.17 | -- | -0.00876 | 6.7 | -- | -- | -- | -- |
| 33.28 | 0.27 | 3.14 | 0.0302 | 0.126 | -- | -- | -- | -0.00807 | 7.05 | -- | -- | -- | -- |
| 33.67 | 0.27 | 3.14 | 0.0305 | -- | 0.153 | -- | -- | -0.000904 | -- | 41.8 | 39 | -- | -- |
| 32.89 | 0.269 | 3.14 | -- | 0.125 | 0.115 | -- | -- | -0.0102 | 5.99 | 41.82 | 99 | -- | -- |
| 34.12 | 0.273 | 3.14 | 0.0327 | -- | -- | -- | -- | -0.00578 | -- | -- | -- | -- | -- |
| 33.31 | 0.27 | 3.14 | -- | 0.126 | -- | -- | -- | -0.0114 | 7.04 | -- | -- | -- | -- |
| 33.7 | 0.27 | 3.14 | -- | -- | 0.142 | -- | -- | -0.00687 | -- | 41.82 | 39 | -- | -- |
| 34.15 | 0.273 | 3.14 | -- | -- | -- | -- | -- | -0.00941 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.10 | humidity | 50 | 10 | < th | dose independent | rect. | 11 | 1 |
| 93 | 27.10 | humidity | 50 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 185 | 30.74 | radiation | 40 | 90 | > th | dose independent | rect. | 8 | 4 |
| 242 | 30.86 | radiation | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 263 | 31.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 285 | 31.15 | radiation | 20 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 286 | 31.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 289 | 31.21 | radiation | 40 | 90 | < th | dose independent | sin | 6 | NA |
| 290 | 31.22 | radiation | 40 | 90 | > th | dose independent | sin | 7 | NA |
| 296 | 31.26 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 298 | 31.26 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 12 |
| 300 | 31.27 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 302 | 31.27 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 303 | 31.28 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 372 | 31.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 373 | 31.39 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 375 | 31.40 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 386 | 31.41 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 391 | 31.44 | radiation | 40 | 90 | < th | dose independent | rect. | 1 | 23 |
| 393 | 31.45 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 10 |
| 398 | 31.46 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 3 |
| 434 | 31.47 | humidity | 60 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 447 | 31.52 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 471 | 31.53 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 476 | 31.54 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 486 | 31.54 | wind | 7 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 488 | 31.55 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 492 | 31.55 | radiation | 40 | 90 | < th | dose independent | rect. | 17 | 23 |
| 523 | 31.57 | wind | 3 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 525 | 31.58 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 527 | 31.58 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 528 | 31.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 530 | 31.59 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 532 | 31.59 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 533 | 31.59 | humidity | 90 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 557 | 31.61 | radiation | 40 | 90 | > th | dose independent | no | NA | NA |
| 706 | 31.63 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 797 | 31.66 | radiation | 40 | 90 | < th | dose independent | rect. | 7 | 23 |
| 820 | 31.67 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 858 | 31.70 | radiation | 40 | 90 | < th | dose independent | no | NA | NA |
| 860 | 31.70 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 861 | 31.70 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 895 | 31.72 | wind | 5 | 720 | > th | dose independent | rect. | 24 | 1 |
| 924 | 31.73 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 6 |
| 928 | 31.73 | radiation | 40 | 90 | < th | dose independent | rect. | 9 | 23 |
| 947 | 31.74 | radiation | 40 | 90 | < th | dose independent | rect. | 21 | 23 |
| 998 | 31.75 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 4 |