Os02g0583000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0583000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252 | 0.746 | 6.42 | -0.281 | 2.95 | 2.98 | -1.01 | -0.781 | 0.153 | 11.6 | 76.45 | 237 | 18.8 | 13.9 |
| 253.19 | 0.741 | 6.41 | -0.263 | 3.08 | 3.04 | -0.717 | -- | 0.153 | 11.7 | 75.17 | 230 | 18.7 | 14 |
| 255.18 | 0.744 | 6.43 | -0.296 | 3.03 | 3.07 | -- | -0.237 | 0.151 | 11.7 | 75.5 | 237 | 18.7 | 14 |
| 255.19 | 0.744 | 6.43 | -0.306 | 3.09 | 3.13 | -- | -- | 0.125 | 11.8 | 75 | 236 | 18.7 | 13.9 |
| 335.92 | 0.854 | 6.49 | -0.182 | -- | 4.13 | -- | 0.0869 | 0.00464 | -- | 48.31 | 718 | 19 | 13.8 |
| 372.17 | 0.904 | 6.42 | -0.0404 | 3.12 | -- | -1.14 | -- | 0.018 | 8.3 | -- | -- | -- | -- |
| 376.22 | 0.908 | 6.42 | -0.0752 | 3.12 | -- | -- | -- | 0.0182 | 8.28 | -- | -- | -- | -- |
| 316.81 | 0.829 | 6.49 | -0.249 | -- | 4.32 | -- | -- | 0.131 | -- | 69.93 | 645 | 21.5 | 10.2 |
| 257.75 | 0.748 | 6.42 | -- | 3.1 | 3.07 | -- | -- | 0.139 | 11.7 | 74.92 | 233 | 18.6 | 14 |
| 916.66 | 1.41 | 6.5 | -0.0542 | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
| 376.37 | 0.908 | 6.42 | -- | 3.12 | -- | -- | -- | 0.0265 | 8.29 | -- | -- | -- | -- |
| 316.01 | 0.828 | 6.48 | -- | -- | 4.25 | -- | -- | 0.143 | -- | 69.86 | 591 | 21.8 | 10.8 |
| 916.74 | 1.41 | 6.5 | -- | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.77 | humidity | 80 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 16 | 261.42 | humidity | 90 | 270 | > th | dose independent | rect. | 18 | 15 |
| 24 | 262.83 | humidity | 90 | 270 | < th | dose independent | sin | 9 | NA |
| 33 | 263.33 | humidity | 90 | 270 | > th | dose independent | sin | 9 | NA |
| 36 | 263.53 | humidity | 80 | 270 | > th | dose dependent | sin | 10 | NA |
| 91 | 267.86 | humidity | 90 | 270 | < th | dose independent | rect. | 22 | 11 |
| 107 | 269.07 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 23 |
| 109 | 269.12 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 9 |
| 139 | 271.06 | humidity | 90 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 154 | 271.68 | humidity | 90 | 270 | > th | dose independent | rect. | 18 | 23 |
| 160 | 271.97 | humidity | 90 | 270 | > th | dose independent | rect. | 21 | 23 |
| 176 | 272.68 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 23 |
| 184 | 272.97 | humidity | 90 | 270 | > th | dose independent | no | NA | NA |
| 229 | 274.99 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 23 |
| 245 | 275.60 | humidity | 90 | 270 | < th | dose independent | rect. | 14 | 23 |
| 253 | 275.99 | humidity | 90 | 270 | < th | dose independent | rect. | 18 | 23 |
| 256 | 276.18 | humidity | 90 | 270 | < th | dose independent | no | NA | NA |
| 305 | 278.58 | humidity | 90 | 270 | < th | dose independent | rect. | 10 | 23 |
| 312 | 278.77 | humidity | 90 | 270 | < th | dose independent | rect. | 4 | 23 |
| 360 | 280.93 | humidity | 90 | 270 | < th | dose dependent | sin | 10 | NA |
| 441 | 284.66 | humidity | 80 | 270 | > th | dose dependent | no | NA | NA |
| 521 | 287.05 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 605 | 288.65 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 654 | 289.97 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 823 | 293.87 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 849 | 294.47 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 868 | 294.95 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 11 |