Os02g0582300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0582300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.28 | 0.424 | 5.52 | 1.96 | 1.15 | 0.616 | 0.525 | 1.65 | 1.11 | 21.4 | 21.6 | 1793 | -- | -- |
| 88.72 | 0.439 | 5.58 | 1.62 | 1.11 | 0.459 | 0.387 | -- | 1.08 | 21.1 | 22.1 | 2060 | -- | -- |
| 82.23 | 0.422 | 5.51 | 1.95 | 1.14 | 0.616 | -- | 1.69 | 1.12 | 21.3 | 21.63 | 1839 | -- | -- |
| 88.38 | 0.438 | 5.56 | 1.58 | 1.05 | 0.426 | -- | -- | 1.04 | 21.2 | 22.26 | 719 | -- | -- |
| 151.64 | 0.574 | 5.55 | 1.67 | -- | 0.852 | -- | 0.809 | 0.931 | -- | 24.8 | 2162 | -- | -- |
| 96.07 | 0.459 | 5.54 | 1.73 | 1.16 | -- | 0.569 | -- | 1.17 | 21.3 | -- | -- | -- | -- |
| 97.23 | 0.462 | 5.54 | 1.71 | 1.16 | -- | -- | -- | 1.17 | 21.3 | -- | -- | -- | -- |
| 133.86 | 0.539 | 5.57 | 1.39 | -- | 0.888 | -- | -- | 0.794 | -- | 25.15 | 718 | -- | -- |
| 102.83 | 0.472 | 5.66 | -- | 1.15 | 1.33 | -- | -- | 0.649 | 21.3 | 18.63 | 47520 | -- | -- |
| 175.24 | 0.619 | 5.51 | 1.72 | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
| 174.41 | 0.618 | 5.58 | -- | 1.16 | -- | -- | -- | 0.975 | 21.4 | -- | -- | -- | -- |
| 178.9 | 0.623 | 5.63 | -- | -- | 1.32 | -- | -- | 0.613 | -- | 19.35 | 47520 | -- | -- |
| 252.96 | 0.742 | 5.55 | -- | -- | -- | -- | -- | 0.97 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 82.10 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 10 | 82.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 21 | 82.35 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 35 | 82.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 37 | 82.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 96 | 82.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 114 | 82.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 123 | 83.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 130 | 83.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 149 | 83.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 166 | 83.17 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 185 | 83.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 190 | 83.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 212 | 83.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 295 | 83.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 296 | 83.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 11 |
| 303 | 83.63 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 316 | 83.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 327 | 83.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 330 | 83.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 381 | 83.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 477 | 84.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 489 | 84.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 497 | 84.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 498 | 84.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 510 | 84.27 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 516 | 84.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 553 | 84.35 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 598 | 84.47 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 635 | 84.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 676 | 84.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 692 | 84.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 694 | 84.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 701 | 84.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 775 | 84.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 817 | 84.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 874 | 85.00 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 875 | 85.00 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 990 | 85.23 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 7 |