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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0581600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.01 (0.0224) R2 : 0.94
β1 : 0.945 (0.0823) R2dD : 0.0181 R2D : -0.186
β2 : 0.53 (0.0555) R2dC : 0.0121 R2C : -0.234
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.8 (0.048) R2dN8 : 1.11 R2N8 : 0.91
σ : 0.422
deviance : 81.34
__
_____
C
peak time of C : 14.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.23 0.405 7.05 0.782 0.365 -0.367 -0.0197 0.145 -4 13.7 24.6 251 -- --
73.62 0.4 7.05 0.835 0.349 -0.36 -0.0928 -- -3.99 14.3 24.3 137 -- --
73.5 0.399 7.06 0.767 0.348 -0.371 -- 0.202 -4.02 14.2 24.3 134 -- --
73.64 0.4 7.05 0.825 0.342 -0.362 -- -- -3.99 14.2 24.38 130 -- --
79.19 0.414 7.07 0.803 -- -0.474 -- 0.0218 -4.04 -- 24.41 135 -- --
81.34 0.423 7.01 0.945 0.53 -- -0.0116 -- -3.8 14.8 -- -- -- --
81.34 0.422 7.01 0.945 0.53 -- -- -- -3.8 14.8 -- -- -- --
79.12 0.414 7.07 0.774 -- -0.492 -- -- -4.07 -- 24.42 128 -- --
90.99 0.444 7.08 -- 0.322 -0.484 -- -- -4.13 13.5 24.4 218 -- --
97.64 0.462 7.01 0.922 -- -- -- -- -3.81 -- -- -- -- --
104.87 0.479 7.03 -- 0.512 -- -- -- -3.9 14.8 -- -- -- --
94.43 0.453 7.1 -- -- -0.57 -- -- -4.2 -- 24.42 129 -- --
120.07 0.511 7.04 -- -- -- -- -- -3.91 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.24 temperature 25.0 270 > th dose independent sin 10 NA
4 71.92 temperature 25.0 270 < th dose independent sin 10 NA
6 72.35 temperature 25.0 270 > th dose independent rect. 19 13
8 72.39 temperature 25.0 270 > th dose independent rect. 22 5
11 72.45 temperature 25.0 270 < th dose independent rect. 21 12
13 72.57 temperature 25.0 270 > th dose independent rect. 19 8
31 72.94 temperature 25.0 270 < th dose independent rect. 15 18
41 73.05 wind 5.0 30 < th dose dependent rect. 11 16
60 73.28 temperature 25.0 270 > th dose independent rect. 19 19
68 73.39 atmosphere 995.0 270 > th dose dependent rect. 3 15
75 73.47 temperature 20.0 30 > th dose dependent rect. 22 16
76 73.48 atmosphere 1000.0 30 > th dose independent rect. 3 23
104 73.74 temperature 20.0 270 > th dose dependent rect. 19 8
113 73.81 temperature 20.0 270 > th dose dependent sin 9 NA
115 73.84 temperature 20.0 10 > th dose dependent rect. 22 7
116 73.85 temperature 20.0 30 > th dose dependent rect. 22 18
117 73.86 wind 5.0 30 < th dose dependent rect. 13 14
151 74.06 temperature 20.0 270 > th dose dependent rect. 20 14
152 74.07 wind 3.0 30 < th dose independent rect. 11 16
153 74.07 atmosphere 1010.0 10 < th dose dependent rect. 8 10
164 74.12 atmosphere 1010.0 720 < th dose dependent rect. 6 5
175 74.16 atmosphere 1010.0 720 < th dose dependent rect. 7 3
178 74.18 temperature 15.0 30 > th dose dependent rect. 19 23
179 74.19 atmosphere 1005.0 270 > th dose independent rect. 3 16
180 74.19 temperature 25.0 30 < th dose independent rect. 3 23
185 74.20 temperature 20.0 30 > th dose dependent rect. 20 18
194 74.24 temperature 20.0 30 > th dose dependent rect. 20 20
215 74.32 temperature 20.0 270 > th dose dependent rect. 19 19
229 74.39 temperature 25.0 90 > th dose dependent rect. 1 3
230 74.40 temperature 20.0 10 > th dose dependent rect. 2 1
248 74.45 atmosphere 1010.0 720 < th dose dependent rect. 9 1
262 74.48 temperature 20.0 10 > th dose independent rect. 2 1
266 74.48 atmosphere 1010.0 270 < th dose dependent rect. 7 9
271 74.50 temperature 25.0 720 > th dose independent rect. 20 3
281 74.52 temperature 20.0 30 > th dose dependent rect. 22 5
288 74.53 temperature 10.0 30 > th dose dependent rect. 15 23
290 74.54 humidity 90.0 10 > th dose independent rect. 2 1
294 74.55 temperature 25.0 270 < th dose independent rect. 20 23
307 74.58 temperature 25.0 270 > th dose independent rect. 6 21
309 74.58 temperature 15.0 30 > th dose independent rect. 3 23
310 74.58 wind 3.0 10 < th dose dependent rect. 2 1
311 74.58 humidity 80.0 10 > th dose dependent rect. 2 1
336 74.62 atmosphere 1010.0 30 < th dose dependent rect. 2 1
337 74.63 wind 3.0 30 < th dose independent rect. 2 1
340 74.63 atmosphere 1005.0 30 > th dose independent rect. 5 14
361 74.65 wind 5.0 30 < th dose dependent rect. 15 12
372 74.66 temperature 20.0 10 > th dose dependent rect. 20 9
391 74.68 temperature 10.0 30 > th dose independent rect. 2 1
394 74.68 temperature 30.0 30 < th dose independent rect. 2 1
395 74.68 humidity 50.0 30 > th dose independent rect. 2 1
398 74.68 atmosphere 995.0 30 > th dose independent rect. 2 1
399 74.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
401 74.68 radiation 1.0 30 < th dose independent rect. 2 1
406 74.68 precipitation 0.1 30 < th dose independent rect. 2 1
409 74.68 radiation 1.0 30 < th dose dependent rect. 2 1
414 74.68 precipitation 0.1 30 < th dose dependent rect. 2 1
416 74.68 temperature 15.0 30 > th dose dependent rect. 24 14
435 74.71 temperature 25.0 720 < th dose independent rect. 17 8
440 74.71 atmosphere 995.0 30 > th dose dependent rect. 2 1
457 74.74 temperature 25.0 720 > th dose independent rect. 15 12
470 74.76 wind 1.0 30 > th dose independent rect. 2 1
478 74.77 temperature 25.0 270 < th dose independent no NA NA
484 74.77 atmosphere 995.0 720 > th dose dependent rect. 3 12
531 74.82 temperature 30.0 30 < th dose dependent rect. 2 1
566 74.87 precipitation 0.1 30 < th dose independent rect. 3 23
575 74.87 precipitation 0.1 30 < th dose dependent rect. 3 23
616 74.94 temperature 25.0 270 > th dose independent rect. 11 23
621 74.95 atmosphere 1005.0 30 > th dose independent rect. 3 16
633 74.97 temperature 25.0 270 > th dose independent no NA NA
655 75.01 temperature 25.0 270 > th dose independent rect. 13 23
681 75.05 atmosphere 995.0 720 > th dose dependent rect. 5 10
696 75.08 atmosphere 995.0 30 > th dose dependent rect. 3 23
698 75.09 wind 5.0 30 < th dose dependent rect. 19 8
719 75.11 temperature 30.0 30 < th dose dependent rect. 3 23
772 75.18 temperature 15.0 30 > th dose dependent rect. 9 18
798 75.22 temperature 25.0 720 < th dose independent rect. 19 4
799 75.22 atmosphere 1005.0 270 < th dose independent rect. 7 9
821 75.25 radiation 1.0 4320 < th dose dependent rect. 3 1
825 75.26 wind 9.0 1440 < th dose independent rect. 3 1
826 75.26 temperature 10.0 1440 > th dose independent rect. 3 1
829 75.26 temperature 30.0 1440 < th dose independent rect. 3 1
833 75.26 humidity 50.0 1440 > th dose independent rect. 3 1
842 75.26 atmosphere 995.0 1440 > th dose independent rect. 3 1
843 75.26 radiation 1.0 1440 < th dose independent rect. 3 1
866 75.26 temperature 10.0 1440 > th dose independent rect. 4 23
902 75.28 temperature 30.0 270 < th dose dependent sin 9 NA
916 75.29 atmosphere 995.0 720 > th dose dependent rect. 3 8
953 75.34 temperature 25.0 720 > th dose independent rect. 15 16
965 75.35 temperature 30.0 90 < th dose dependent sin 7 NA
972 75.35 wind 7.0 270 < th dose dependent rect. 6 21
974 75.36 temperature 25.0 720 > th dose dependent rect. 20 3
991 75.38 wind 5.0 30 < th dose dependent rect. 17 10
996 75.39 humidity 50.0 30 > th dose independent rect. 3 23