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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0581100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16 (0.0267) R2 : 0.547
β1 : -1.83 (0.0977) R2dD : 0.427 R2D : 0.146
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.07 (0.0996) R2dE : 0.151 R2E : -0.203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.987 (0.0635) R2dN8 : 0.46 R2N8 : 0.0395
σ : 0.481
deviance : 106.8
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.04
memory length : 14105
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.01 0.431 16 -1.74 0.529 0.993 1.55 0.862 -0.98 0.212 1.389 14402 -- --
86.25 0.433 16 -1.69 0.554 0.957 1.56 -- -0.98 0.167 1.94 14529 -- --
93.92 0.451 16 -1.79 0.487 1.01 -- 1.06 -0.964 0.3 1.474 14262 -- --
94.7 0.453 16.1 -1.99 0.564 0.999 -- -- -1 0.567 1.859 13077 -- --
104.51 0.476 16 -1.79 -- 1.02 -- 0.943 -0.966 -- 1.649 14090 -- --
106.34 0.483 16 -1.63 0.563 -- 1.61 -- -0.741 0.338 -- -- -- --
117.44 0.507 16 -1.69 0.56 -- -- -- -0.75 0.585 -- -- -- --
106.8 0.481 16 -1.83 -- 1.07 -- -- -0.987 -- 2.04 14105 -- --
166.38 0.601 16 -- 0.526 0.59 -- -- -0.776 0.831 49.79 16271 -- --
137.07 0.547 16 -1.67 -- -- -- -- -0.74 -- -- -- -- --
192.78 0.649 16 -- 0.535 -- -- -- -0.561 0.431 -- -- -- --
175.02 0.616 16 -- -- 1.1 -- -- -0.74 -- 49.83 16875 -- --
210.74 0.678 15.9 -- -- -- -- -- -0.555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.19 precipitation 0.1 43200 > th dose dependent rect. 2 2
2 78.25 precipitation 0.1 43200 > th dose independent rect. 2 2
3 78.25 precipitation 0.1 43200 < th dose independent rect. 2 2
4 78.25 precipitation 0.1 43200 < th dose dependent rect. 2 2
7 79.24 precipitation 0.1 43200 > th dose dependent rect. 17 3
20 79.84 precipitation 0.1 43200 > th dose independent rect. 17 2
21 79.84 precipitation 0.1 43200 < th dose independent rect. 17 2
22 79.84 precipitation 0.1 43200 < th dose dependent rect. 17 2
37 80.42 precipitation 0.1 43200 > th dose dependent rect. 17 15
42 80.56 precipitation 0.1 43200 > th dose dependent rect. 17 11
87 80.95 precipitation 0.1 43200 > th dose dependent rect. 2 16
102 81.09 precipitation 0.1 43200 > th dose dependent rect. 2 18
121 81.27 precipitation 0.1 43200 > th dose dependent sin 17 NA
138 81.42 precipitation 0.1 43200 > th dose dependent rect. 23 7
181 81.70 precipitation 0.1 43200 > th dose dependent rect. 23 22
184 81.71 humidity 70.0 14400 > th dose dependent rect. 21 10
186 81.73 humidity 50.0 14400 > th dose dependent rect. 21 10
198 81.76 precipitation 0.1 43200 > th dose dependent rect. 23 19
246 82.02 humidity 80.0 14400 > th dose dependent rect. 5 2
281 82.19 humidity 50.0 14400 > th dose dependent rect. 5 2
286 82.21 precipitation 0.1 43200 < th dose independent rect. 23 7
288 82.21 precipitation 0.1 43200 < th dose dependent rect. 23 7
295 82.25 precipitation 0.1 43200 > th dose independent rect. 23 7
323 82.33 humidity 60.0 43200 > th dose independent rect. 15 1
324 82.33 precipitation 0.1 43200 > th dose dependent rect. 2 22
328 82.35 humidity 60.0 43200 < th dose independent rect. 15 1
350 82.43 precipitation 0.1 43200 > th dose dependent rect. 19 13
436 82.72 precipitation 0.1 43200 > th dose dependent rect. 19 23
476 82.86 precipitation 0.1 43200 > th dose dependent no NA NA
493 82.93 humidity 90.0 14400 > th dose independent rect. 1 1
496 82.95 precipitation 0.1 43200 > th dose dependent rect. 19 2
555 83.13 humidity 80.0 14400 > th dose dependent rect. 1 7
570 83.19 humidity 90.0 43200 > th dose independent rect. 21 1
603 83.27 precipitation 0.1 43200 > th dose independent rect. 17 15
612 83.29 precipitation 0.1 43200 < th dose independent rect. 17 15
615 83.29 precipitation 0.1 43200 < th dose dependent rect. 17 15
623 83.34 radiation 1.0 14400 > th dose independent rect. 4 2
624 83.34 radiation 1.0 14400 < th dose independent rect. 4 2
636 83.34 radiation 1.0 14400 < th dose independent rect. 20 10
650 83.36 radiation 1.0 14400 < th dose independent rect. 23 7
658 83.38 humidity 70.0 43200 > th dose dependent rect. 17 2
689 83.47 humidity 70.0 14400 > th dose dependent rect. 1 1
734 83.62 humidity 90.0 43200 > th dose dependent rect. 21 1
793 83.76 precipitation 0.1 43200 < th dose independent rect. 19 13
796 83.76 precipitation 0.1 43200 < th dose dependent rect. 19 13
797 83.77 precipitation 0.1 43200 > th dose independent rect. 19 13
799 83.78 wind 1.0 14400 > th dose independent rect. 22 1
903 84.03 humidity 80.0 43200 > th dose independent rect. 14 7
906 84.03 precipitation 0.1 43200 > th dose independent rect. 16 12
910 84.04 precipitation 0.1 43200 < th dose independent rect. 16 12
914 84.04 precipitation 0.1 43200 < th dose dependent rect. 16 12
969 84.13 radiation 1.0 14400 > th dose independent sin 8 NA
977 84.14 radiation 1.0 14400 < th dose independent sin 8 NA
986 84.16 humidity 90.0 43200 > th dose dependent rect. 8 1
993 84.18 humidity 80.0 43200 > th dose independent rect. 17 1