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Os02g0580900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0415) R2 : 0.825
β1 : -0.387 (0.153) R2dD : 0.00289 R2D : 0.00472
β2 : 2 (0.105) R2dC : 0.146 R2C : 0.265
β3 : -4.7 (0.129) R2dE : 0.535 R2E : 0.667
β4 : 2.78 (0.413) R2dD*C : 0.0126 R2D*C : 0.014
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0885) R2dN8 : 0.00158 R2N8 : 0.00226
σ : 0.774
deviance : 276.19
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C
peak time of C : 9.2
E
wheather : temperature
threshold : 5.215
memory length : 280
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 17.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
276.5 0.781 12.3 -0.32 2.01 -4.54 2.53 1.04 -0.126 8.78 6.858 282 5.06 17.9
276.19 0.774 12.4 -0.387 2 -4.7 2.78 -- -0.144 9.2 5.215 280 5.03 17.9
295.15 0.8 12.4 -0.331 1.97 -4.72 -- 0.351 -0.188 9.39 3.199 289 5.07 17.6
294.78 0.8 12.4 -0.33 1.96 -4.82 -- -- -0.174 9.51 3.087 295 5.03 17.6
367.01 0.892 12.4 0.0328 -- -5.42 -- -0.174 -0.0598 -- -5.639 523 4.1 18.5
441.05 0.985 12.4 -0.825 4.6 -- 2.7 -- -0.444 6.11 -- -- -- --
458.66 1 12.4 -0.801 4.62 -- -- -- -0.455 6.05 -- -- -- --
355.5 0.878 12.3 0.0294 -- -5.63 -- -- -0.147 -- -2.932 506 4.88 17.1
297.63 0.804 12.4 -- 1.9 -5.01 -- -- -0.144 9.83 3.385 303 5.03 17.5
1564.06 1.85 12.5 -0.668 -- -- -- -- -0.351 -- -- -- -- --
475.56 1.02 12.4 -- 4.61 -- -- -- -0.366 6.06 -- -- -- --
350.8 0.872 12.4 -- -- -5.68 -- -- -0.143 -- -0.6967 507 4.92 17.1
1575.82 1.85 12.4 -- -- -- -- -- -0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.85 temperature 10 270 > th dose dependent rect. 5 18
2 284.93 temperature 10 270 > th dose dependent rect. 18 15
4 291.65 temperature 10 270 > th dose dependent rect. 17 17
8 295.04 temperature 10 270 > th dose dependent rect. 16 8
36 308.02 temperature 15 10 > th dose dependent rect. 6 20
40 309.00 temperature 20 270 > th dose independent rect. 16 8
41 309.03 temperature 20 90 > th dose independent rect. 6 20
59 313.70 temperature 30 270 < th dose dependent rect. 21 8
69 314.87 temperature 30 270 < th dose dependent rect. 10 19
87 317.82 radiation 1 270 < th dose dependent sin 9 NA
96 319.39 temperature 30 90 < th dose dependent rect. 23 8
106 320.42 radiation 1 270 < th dose independent sin 10 NA
107 320.50 temperature 15 10 > th dose dependent rect. 20 15
148 324.22 atmosphere 1015 270 < th dose independent rect. 5 17
150 324.91 temperature 10 270 > th dose dependent rect. 5 5
152 325.13 radiation 1 270 > th dose independent sin 10 NA
180 327.21 temperature 20 90 > th dose independent rect. 19 16
185 327.97 radiation 1 270 < th dose dependent rect. 21 16
201 329.19 humidity 60 43200 < th dose independent rect. 4 5
216 329.94 radiation 1 270 < th dose dependent rect. 21 20
223 330.52 radiation 1 270 < th dose independent rect. 21 20
236 331.26 radiation 1 270 < th dose independent rect. 21 16
245 331.60 radiation 1 270 < th dose dependent rect. 21 10
247 331.64 humidity 60 43200 < th dose dependent rect. 3 7
253 331.74 humidity 60 43200 < th dose dependent rect. 23 11
257 331.83 humidity 60 43200 < th dose independent rect. 22 11
269 332.14 humidity 60 43200 > th dose independent rect. 4 5
273 332.33 temperature 30 10 < th dose dependent sin 8 NA
278 332.41 humidity 60 43200 > th dose independent rect. 8 1
282 332.51 temperature 30 10 < th dose dependent rect. 12 18
284 332.59 radiation 1 270 < th dose independent rect. 21 10
291 332.84 humidity 60 43200 > th dose independent rect. 22 11
293 332.87 wind 1 14400 < th dose dependent rect. 23 3
296 333.02 radiation 20 43200 < th dose independent rect. 13 1
325 333.73 radiation 40 43200 < th dose independent rect. 13 1
327 333.76 humidity 50 43200 > th dose independent sin 8 NA
331 333.81 atmosphere 995 270 > th dose dependent rect. 11 18
335 333.92 temperature 30 10 < th dose dependent rect. 11 20
337 333.97 wind 7 43200 > th dose dependent rect. 16 1
344 334.20 humidity 50 43200 < th dose independent sin 7 NA
349 334.23 radiation 10 43200 < th dose independent rect. 12 5
356 334.34 humidity 70 43200 < th dose independent rect. 2 16
363 334.47 humidity 70 43200 < th dose independent rect. 16 2
364 334.48 humidity 70 43200 > th dose independent rect. 15 5
365 334.48 humidity 70 43200 < th dose independent rect. 15 5
369 334.54 humidity 70 43200 < th dose independent rect. 14 7
378 334.63 humidity 50 43200 > th dose independent rect. 19 18
380 334.64 humidity 70 43200 > th dose independent rect. 2 17
386 334.70 humidity 70 43200 < th dose independent rect. 13 9
394 334.75 radiation 10 43200 < th dose independent rect. 16 1
407 334.83 humidity 70 43200 > th dose independent rect. 16 3
416 334.89 humidity 70 43200 > th dose independent rect. 12 11
444 335.00 humidity 70 43200 < th dose independent sin 19 NA
446 335.00 radiation 10 43200 < th dose independent rect. 12 19
450 335.03 humidity 70 43200 > th dose independent rect. 13 9
461 335.07 temperature 15 270 > th dose independent rect. 17 16
473 335.13 humidity 70 43200 > th dose independent sin 19 NA
503 335.26 humidity 50 43200 < th dose independent rect. 19 19
559 335.44 humidity 50 43200 < th dose independent rect. 3 11
578 335.49 radiation 30 43200 > th dose dependent rect. 13 1
580 335.50 radiation 10 43200 > th dose dependent rect. 13 1
610 335.63 wind 9 43200 < th dose independent rect. 15 2
614 335.64 radiation 10 43200 < th dose independent sin 14 NA
630 335.68 atmosphere 1015 270 < th dose independent rect. 17 17
657 335.76 radiation 1 270 > th dose independent rect. 17 17
688 335.83 humidity 60 43200 > th dose dependent rect. 18 4
768 336.08 humidity 60 43200 > th dose dependent rect. 17 6
810 336.23 temperature 20 10 > th dose independent rect. 20 15
812 336.24 wind 9 43200 > th dose independent rect. 9 8
838 336.33 humidity 60 43200 > th dose dependent rect. 19 2
864 336.39 humidity 70 43200 < th dose independent rect. 12 20
878 336.41 atmosphere 1010 43200 > th dose dependent rect. 16 3
889 336.46 humidity 80 43200 < th dose independent rect. 17 8
895 336.47 atmosphere 995 270 > th dose dependent rect. 22 7
937 336.63 humidity 70 43200 > th dose independent rect. 12 20
972 336.72 atmosphere 1015 270 < th dose independent rect. 16 7