Os02g0580800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0580800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.06 | 0.176 | 11.5 | -0.148 | 0.122 | 0.191 | -0.585 | 1.5 | -0.0963 | 18.7 | 25.23 | 574 | -- | -- |
| 14.5 | 0.177 | 11.6 | -0.348 | 0.201 | 0.277 | -0.243 | -- | -0.142 | 18.7 | 25.82 | 1827 | -- | -- |
| 14.56 | 0.178 | 11.5 | -0.0252 | 0.214 | 0.00993 | -- | 2.09 | -0.0678 | 18.7 | 27.64 | 893 | -- | -- |
| 14.52 | 0.177 | 11.6 | -0.378 | 0.198 | 0.267 | -- | -- | -0.137 | 19 | 26.7 | 1828 | -- | -- |
| 15.27 | 0.182 | 11.5 | -0.287 | -- | 0.323 | -- | 0.499 | -0.11 | -- | 25.7 | 538 | -- | -- |
| 16.5 | 0.19 | 11.6 | -0.296 | 0.238 | -- | -0.194 | -- | -0.129 | 19 | -- | -- | -- | -- |
| 16.6 | 0.191 | 11.6 | -0.293 | 0.237 | -- | -- | -- | -0.129 | 19.1 | -- | -- | -- | -- |
| 15.04 | 0.181 | 11.6 | -0.364 | -- | 0.401 | -- | -- | -0.16 | -- | 25.14 | 415 | -- | -- |
| 17.69 | 0.196 | 11.5 | -- | 0.222 | 0.198 | -- | -- | -0.0802 | 18.8 | 28.5 | 1858 | -- | -- |
| 19.57 | 0.207 | 11.6 | -0.297 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 18.86 | 0.203 | 11.6 | -- | 0.241 | -- | -- | -- | -0.0969 | 19 | -- | -- | -- | -- |
| 18.34 | 0.199 | 11.5 | -- | -- | 0.357 | -- | -- | -0.104 | -- | 26.18 | 389 | -- | -- |
| 21.9 | 0.218 | 11.5 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.30 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 5 | 13.41 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 18 | 13.72 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 27 | 13.78 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 34 | 13.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 37 | 13.82 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 10 |
| 49 | 13.87 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 19 |
| 54 | 13.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 64 | 13.91 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 67 | 13.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 77 | 13.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 87 | 13.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 89 | 13.94 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 97 | 13.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 104 | 13.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 105 | 13.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 111 | 13.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 127 | 13.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 140 | 14.00 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 141 | 14.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 161 | 14.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 168 | 14.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 169 | 14.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 224 | 14.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 226 | 14.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 249 | 14.04 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 313 | 14.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 335 | 14.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 345 | 14.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 346 | 14.07 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 372 | 14.08 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 19 |
| 398 | 14.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 407 | 14.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 445 | 14.10 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 467 | 14.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 470 | 14.11 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 557 | 14.13 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 669 | 14.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 698 | 14.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 707 | 14.16 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 709 | 14.16 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 731 | 14.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 738 | 14.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 746 | 14.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 835 | 14.18 | temperature | 15 | 30 | > th | dose dependent | rect. | 15 | 5 |
| 928 | 14.20 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 7 |