Os02g0580300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 14-3-3 protein 6.
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Os02g0580300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 14-3-3 protein 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.14 | 0.2 | 12.1 | -0.738 | 0.181 | 0.689 | 0.631 | -0.991 | -0.105 | 4.5 | 21.21 | 355 | -- | -- |
| 18.61 | 0.201 | 12.1 | -0.77 | 0.161 | 0.939 | 0.308 | -- | -0.109 | 13.7 | 12 | 401 | -- | -- |
| 18.49 | 0.2 | 12.1 | -0.775 | 0.14 | 0.758 | -- | -0.551 | -0.119 | 5.55 | 20 | 362 | -- | -- |
| 18.82 | 0.202 | 12.1 | -0.772 | 0.22 | 0.962 | -- | -- | -0.113 | 13.2 | 11.41 | 385 | -- | -- |
| 18.47 | 0.2 | 12.1 | -0.756 | -- | 0.839 | -- | -0.488 | -0.103 | -- | 15.56 | 409 | -- | -- |
| 25.08 | 0.235 | 12.2 | -0.798 | 0.774 | -- | -0.188 | -- | -0.173 | 3.44 | -- | -- | -- | -- |
| 25.19 | 0.235 | 12.2 | -0.795 | 0.774 | -- | -- | -- | -0.172 | 3.45 | -- | -- | -- | -- |
| 19.18 | 0.204 | 12.1 | -0.774 | -- | 0.832 | -- | -- | -0.108 | -- | 14.2 | 416 | -- | -- |
| 33.89 | 0.271 | 12.1 | -- | 0.192 | 0.941 | -- | -- | -0.0295 | 12.7 | 15.92 | 356 | -- | -- |
| 58.75 | 0.358 | 12.2 | -0.762 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 41.85 | 0.303 | 12.1 | -- | 0.758 | -- | -- | -- | -0.0835 | 3.46 | -- | -- | -- | -- |
| 34.26 | 0.273 | 12.1 | -- | -- | 0.89 | -- | -- | -0.0106 | -- | 22.24 | 402 | -- | -- |
| 74.08 | 0.402 | 12.1 | -- | -- | -- | -- | -- | -0.067 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.23 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 5 | 18.50 | radiation | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 10 | 18.69 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 20 |
| 12 | 18.70 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 23 |
| 17 | 18.77 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 18 | 18.78 | radiation | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 19 | 18.79 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 30 | 18.93 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 31 | 18.93 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 12 |
| 109 | 18.94 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 23 |
| 116 | 19.00 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 119 | 19.02 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 135 | 19.05 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 136 | 19.05 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 171 | 19.18 | radiation | 10 | 720 | > th | dose independent | rect. | 7 | 5 |
| 173 | 19.18 | radiation | 10 | 270 | > th | dose independent | rect. | 11 | 23 |
| 222 | 19.26 | radiation | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 233 | 19.30 | radiation | 10 | 270 | > th | dose independent | sin | 23 | NA |
| 248 | 19.33 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 23 |
| 266 | 19.36 | radiation | 30 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 278 | 19.38 | radiation | 10 | 720 | > th | dose independent | sin | 5 | NA |
| 304 | 19.41 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 22 |
| 329 | 19.43 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 378 | 19.51 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 383 | 19.52 | radiation | 20 | 720 | < th | dose independent | rect. | 4 | 19 |
| 402 | 19.55 | radiation | 10 | 270 | < th | dose independent | sin | 23 | NA |
| 407 | 19.55 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 422 | 19.59 | radiation | 20 | 720 | < th | dose independent | rect. | 4 | 10 |
| 423 | 19.59 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 440 | 19.61 | radiation | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 454 | 19.63 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 459 | 19.64 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 467 | 19.65 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 478 | 19.66 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 490 | 19.67 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 12 |
| 499 | 19.68 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 527 | 19.71 | radiation | 1 | 720 | > th | dose dependent | sin | 7 | NA |
| 532 | 19.71 | radiation | 40 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 585 | 19.75 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 9 |
| 588 | 19.75 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 20 |
| 605 | 19.76 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 628 | 19.77 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 692 | 19.78 | radiation | 20 | 720 | < th | dose independent | rect. | 19 | 19 |
| 697 | 19.78 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 734 | 19.79 | radiation | 1 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 787 | 19.81 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 795 | 19.82 | humidity | 60 | 270 | > th | dose dependent | sin | 23 | NA |
| 808 | 19.83 | humidity | 90 | 270 | < th | dose dependent | sin | 0 | NA |
| 822 | 19.84 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 7 |
| 869 | 19.87 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 21 |
| 875 | 19.87 | radiation | 1 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 898 | 19.88 | humidity | 70 | 270 | < th | dose independent | rect. | 14 | 23 |
| 953 | 19.90 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 18 |