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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0577300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galectin, galactose-binding lectin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0302) R2 : 0.538
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.979 (0.0715) R2dC : 0.197 R2C : 0.239
β3 : -0.901 (0.0836) R2dE : 0.146 R2E : 0.268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.476 (0.0683) R2dN8 : 0.0766 R2N8 : 0.137
σ : 0.555
deviance : 142
__
_____
C
peak time of C : 24
E
wheather : temperature
threshold : 23.93
memory length : 2146
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.16 0.558 4.01 0.23 0.983 -0.871 -0.128 -0.743 0.549 24 23.98 2137 -- --
142.04 0.555 4.03 -0.0565 0.972 -0.915 -0.0321 -- 0.493 0.000339 23.9 2142 -- --
141.22 0.553 4.01 0.224 0.982 -0.873 -- -0.711 0.547 24 23.98 2143 -- --
141.98 0.555 4.04 -0.0427 0.985 -0.909 -- -- 0.476 24 23.9 2147 -- --
196.75 0.653 4.01 0.0255 -- -1.17 -- -0.424 0.457 -- 24.08 2269 -- --
174.96 0.62 3.97 0.346 1.11 -- -0.0265 -- 0.818 23.9 -- -- -- --
174.96 0.619 3.97 0.347 1.11 -- -- -- 0.818 23.9 -- -- -- --
196.26 0.652 4.04 -0.125 -- -1.23 -- -- 0.41 -- 24.11 2275 -- --
142 0.555 4.04 -- 0.979 -0.901 -- -- 0.476 24 23.93 2146 -- --
253.11 0.743 3.94 0.381 -- -- -- -- 0.833 -- -- -- -- --
178.14 0.624 3.98 -- 1.12 -- -- -- 0.78 23.9 -- -- -- --
195.99 0.652 4.04 -- -- -1.37 -- -- 0.429 -- 24.8 2342 -- --
256.94 0.748 3.95 -- -- -- -- -- 0.791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.62 temperature 20.0 270 > th dose dependent rect. 23 7
2 140.69 wind 1.0 14400 > th dose independent rect. 21 2
5 142.25 temperature 20.0 10 > th dose dependent rect. 2 5
6 142.72 temperature 20.0 1440 > th dose dependent rect. 5 2
7 142.85 wind 7.0 14400 < th dose independent rect. 5 5
9 143.03 wind 1.0 43200 < th dose dependent rect. 7 1
12 143.09 temperature 30.0 720 < th dose dependent rect. 18 8
15 143.26 temperature 20.0 720 > th dose dependent rect. 16 14
19 143.50 radiation 1.0 14400 < th dose dependent rect. 2 3
20 143.52 radiation 1.0 14400 < th dose dependent rect. 4 1
30 143.90 temperature 20.0 720 > th dose dependent sin 13 NA
31 143.93 temperature 25.0 1440 < th dose independent rect. 22 2
34 144.03 wind 7.0 14400 > th dose independent rect. 5 5
37 144.11 temperature 20.0 10 > th dose dependent rect. 24 7
40 144.17 temperature 20.0 720 > th dose dependent rect. 18 9
49 144.31 temperature 10.0 720 > th dose dependent rect. 17 8
61 144.57 wind 1.0 14400 < th dose independent rect. 20 3
70 144.69 temperature 20.0 4320 > th dose dependent rect. 2 1
77 144.81 temperature 25.0 1440 > th dose independent rect. 6 1
78 144.81 wind 1.0 14400 < th dose dependent rect. 20 3
83 144.88 temperature 20.0 10 > th dose dependent rect. 16 15
87 144.95 humidity 60.0 43200 < th dose independent rect. 20 16
88 144.98 temperature 25.0 1440 < th dose independent rect. 21 15
96 145.06 temperature 25.0 1440 < th dose independent rect. 20 5
97 145.07 humidity 60.0 43200 < th dose independent rect. 24 12
106 145.13 temperature 20.0 14400 < th dose dependent rect. 4 1
109 145.17 temperature 20.0 30 > th dose independent rect. 2 5
114 145.24 temperature 20.0 270 > th dose independent rect. 1 17
122 145.33 temperature 30.0 720 < th dose dependent sin 14 NA
125 145.35 temperature 20.0 1440 > th dose dependent rect. 21 11
128 145.38 wind 5.0 4320 > th dose independent rect. 20 7
137 145.44 temperature 10.0 4320 > th dose dependent rect. 4 1
144 145.50 temperature 30.0 4320 < th dose dependent rect. 4 1
147 145.51 temperature 20.0 4320 > th dose dependent rect. 22 8
153 145.53 temperature 10.0 720 > th dose dependent rect. 16 14
169 145.61 temperature 20.0 14400 < th dose dependent rect. 2 14
172 145.62 temperature 20.0 14400 < th dose dependent rect. 3 7
183 145.65 temperature 25.0 1440 > th dose independent rect. 21 3
189 145.66 wind 5.0 4320 < th dose independent rect. 20 7
210 145.72 temperature 20.0 30 > th dose independent rect. 2 18
217 145.74 temperature 20.0 1440 > th dose dependent rect. 22 1
226 145.78 temperature 25.0 1440 < th dose independent rect. 6 1
252 145.88 temperature 25.0 1440 > th dose independent rect. 21 16
259 145.89 temperature 20.0 14400 < th dose dependent rect. 23 19
260 145.90 humidity 70.0 43200 < th dose independent rect. 1 8
263 145.90 temperature 20.0 14400 < th dose dependent sin 4 NA
296 145.97 temperature 25.0 1440 > th dose independent rect. 22 1
326 146.03 wind 5.0 14400 < th dose independent rect. 10 2
342 146.07 temperature 30.0 4320 < th dose dependent rect. 2 3
356 146.10 temperature 10.0 720 > th dose dependent sin 14 NA
358 146.10 temperature 30.0 4320 < th dose dependent rect. 2 1
387 146.16 humidity 60.0 43200 < th dose independent rect. 8 4
418 146.24 temperature 20.0 14400 < th dose dependent rect. 9 21
428 146.26 temperature 20.0 14400 < th dose dependent rect. 11 19
480 146.35 humidity 90.0 43200 > th dose dependent rect. 5 1
486 146.36 temperature 20.0 14400 < th dose dependent rect. 22 8
580 146.49 temperature 20.0 14400 < th dose dependent no NA NA
616 146.51 humidity 60.0 43200 > th dose independent rect. 24 11
666 146.56 temperature 10.0 1440 > th dose dependent rect. 6 1
686 146.59 wind 5.0 14400 > th dose independent rect. 24 14
687 146.59 humidity 60.0 43200 > th dose independent rect. 21 14
695 146.60 radiation 1.0 43200 > th dose independent rect. 18 1
714 146.61 temperature 30.0 1440 < th dose dependent rect. 6 1
785 146.74 temperature 30.0 4320 < th dose dependent rect. 21 8
795 146.76 temperature 10.0 4320 > th dose dependent rect. 21 9
816 146.81 radiation 1.0 43200 < th dose independent rect. 18 9
827 146.82 precipitation 0.1 14400 > th dose independent rect. 21 4
838 146.83 radiation 1.0 43200 < th dose independent rect. 18 7
867 146.85 temperature 25.0 1440 < th dose independent sin 9 NA
881 146.87 radiation 1.0 43200 < th dose independent rect. 18 1
886 146.87 wind 5.0 14400 < th dose independent rect. 24 14
907 146.89 temperature 30.0 4320 < th dose dependent rect. 22 1
924 146.92 wind 5.0 14400 > th dose independent rect. 10 2
950 146.94 temperature 25.0 720 < th dose dependent rect. 9 17
998 147.01 radiation 1.0 43200 < th dose dependent rect. 21 8