Os02g0575000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0575000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.01 | 0.577 | 10.6 | -2.19 | 1.04 | 1.48 | -0.168 | -2.3 | 0.18 | 3.64 | 26.53 | 1274 | -- | -- |
| 152.53 | 0.575 | 10.5 | -1.67 | 1.08 | 1.24 | -0.216 | -- | 0.326 | 3.47 | 26.82 | 1287 | -- | -- |
| 151.1 | 0.573 | 10.6 | -2.2 | 1.04 | 1.49 | -- | -2.37 | 0.178 | 3.64 | 26.53 | 1274 | -- | -- |
| 152.45 | 0.575 | 10.5 | -1.6 | 1.05 | 1.23 | -- | -- | 0.321 | 3.5 | 26.7 | 1284 | -- | -- |
| 208.64 | 0.673 | 10.6 | -1.83 | -- | 1.52 | -- | -0.905 | 0.153 | -- | 24.8 | 1244 | -- | -- |
| 216.06 | 0.689 | 10.5 | -1.23 | 1.21 | -- | 0.0951 | -- | 0.333 | 3.3 | -- | -- | -- | -- |
| 216.09 | 0.688 | 10.5 | -1.24 | 1.22 | -- | -- | -- | 0.332 | 3.3 | -- | -- | -- | -- |
| 208.7 | 0.673 | 10.6 | -1.69 | -- | 1.59 | -- | -- | 0.15 | -- | 24.44 | 1217 | -- | -- |
| 215.36 | 0.683 | 10.4 | -- | 1.05 | 0.899 | -- | -- | 0.704 | 3.57 | 30.3 | 1276 | -- | -- |
| 299.54 | 0.809 | 10.5 | -1.18 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 256.38 | 0.749 | 10.5 | -- | 1.19 | -- | -- | -- | 0.47 | 3.3 | -- | -- | -- | -- |
| 276.33 | 0.774 | 10.5 | -- | -- | 1.13 | -- | -- | 0.596 | -- | 27.9 | 1233 | -- | -- |
| 336.57 | 0.856 | 10.5 | -- | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 151.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 24 | 152.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 55 | 153.65 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 136 | 155.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 139 | 155.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 212 | 155.50 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 284 | 156.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 289 | 156.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 473 | 157.27 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 479 | 157.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 526 | 157.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 544 | 157.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 661 | 157.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 681 | 158.19 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 683 | 158.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 733 | 158.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 735 | 158.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 741 | 158.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 744 | 158.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 760 | 158.52 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 776 | 158.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 808 | 158.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 812 | 158.65 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 845 | 158.69 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 849 | 158.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 862 | 158.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 865 | 158.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 917 | 158.76 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 948 | 158.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |