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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0574800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.58 (0.0525) R2 : 0.494
β1 : -0.541 (0.23) R2dD : 0.0111 R2D : -0.021
β2 : 1.97 (0.121) R2dC : 0.292 R2C : 0.297
β3 : -1.94 (0.261) R2dE : 0.108 R2E : 0.128
β4 : -2.62 (0.474) R2dD*C : 0.0354 R2D*C : 0.0382
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.494 (0.126) R2dN8 : 0.0299 R2N8 : 0.0639
σ : 0.94
deviance : 407.05
__
_____
C
peak time of C : 22.2
E
wheather : temperature
threshold : 24.53
memory length : 6189
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
401.13 0.941 5.47 -0.253 1.93 -2.91 -2.7 -3.61 0.561 22.2 22.83 5225 -- --
407.05 0.94 5.58 -0.541 1.97 -1.94 -2.62 -- 0.494 22.2 24.53 6189 -- --
423.27 0.958 5.34 -0.558 1.96 -5.65 -- -8.89 0.606 22.5 20.35 6307 -- --
434.01 0.97 5.59 -0.539 1.96 -2.03 -- -- 0.456 22.4 23.93 6364 -- --
654.21 1.19 5.33 -0.55 -- -5.09 -- -7.53 0.527 -- 21.28 6566 -- --
458.1 1 5.48 0.431 1.99 -- -2.58 -- 0.96 22.3 -- -- -- --
484.14 1.03 5.47 0.529 2 -- -- -- 0.964 22.5 -- -- -- --
607.41 1.15 5.5 -0.093 -- -2.63 -- -- 0.458 -- 28.31 806 -- --
438.21 0.975 5.56 -- 1.97 -1.6 -- -- 0.589 22.4 24.99 6264 -- --
729.3 1.26 5.42 0.563 -- -- -- -- 0.972 -- -- -- -- --
491.51 1.04 5.49 -- 2 -- -- -- 0.905 22.5 -- -- -- --
607.06 1.15 5.54 -- -- -2.63 -- -- 0.435 -- 28.3 778 -- --
737.67 1.27 5.44 -- -- -- -- -- 0.909 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 375.79 atmosphere 1015 43200 > th dose dependent rect. 2 2
3 376.18 atmosphere 1015 43200 > th dose dependent rect. 1 5
42 377.34 atmosphere 1015 43200 > th dose dependent rect. 7 1
56 377.53 atmosphere 1015 43200 > th dose dependent sin 6 NA
128 378.25 atmosphere 1015 43200 > th dose independent rect. 24 1
151 378.45 atmosphere 1015 43200 < th dose independent rect. 24 2
174 378.66 atmosphere 1015 43200 < th dose independent rect. 23 4
176 378.68 atmosphere 1015 43200 > th dose independent rect. 23 4
185 378.76 atmosphere 1015 43200 > th dose independent rect. 21 7
298 379.32 atmosphere 1015 43200 > th dose independent sin 10 NA
323 379.40 atmosphere 1015 43200 < th dose independent rect. 20 15
346 379.47 atmosphere 1015 43200 < th dose independent sin 10 NA
405 379.63 atmosphere 1015 43200 > th dose dependent no NA NA
508 379.93 atmosphere 1015 43200 > th dose dependent rect. 5 23
648 380.30 atmosphere 1015 43200 > th dose independent rect. 9 23
659 380.34 atmosphere 1015 43200 > th dose independent no NA NA
665 380.35 atmosphere 1015 43200 < th dose independent rect. 9 23
675 380.37 atmosphere 1015 43200 > th dose independent rect. 7 23
679 380.38 atmosphere 1015 43200 > th dose independent rect. 5 23
684 380.40 atmosphere 1015 43200 < th dose independent no NA NA
705 380.42 atmosphere 1015 43200 < th dose independent rect. 4 23
709 380.43 atmosphere 1015 43200 > th dose independent rect. 24 23
710 380.43 atmosphere 1015 43200 < th dose independent rect. 7 23
744 380.49 atmosphere 1015 43200 < th dose independent rect. 24 23
821 380.69 atmosphere 1015 43200 > th dose independent rect. 20 1
826 380.70 atmosphere 1015 43200 > th dose independent rect. 5 1
848 380.74 atmosphere 1015 43200 < th dose independent rect. 5 1
858 380.77 atmosphere 1015 43200 < th dose independent rect. 4 3
924 380.94 atmosphere 1015 43200 < th dose independent rect. 21 1
991 381.10 atmosphere 1015 43200 < th dose independent rect. 7 1