FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0574100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sugar transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.92 (0.0592) R2 : 0.782
β1 : 2.65 (0.217) R2dD : 0.0661 R2D : 0.0554
β2 : 10.5 (0.376) R2dC : 2.54 R2C : -0.0484
β3 : 6.74 (0.434) R2dE : 0.752 R2E : -1.8
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.436 (0.127) R2dN8 : 0.0051 R2N8 : -0.0118
σ : 1.11
deviance : 564.85
__
_____
C
peak time of C : 14.6
E
wheather : humidity
threshold : 35.74
memory length : 450
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 6.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
583.92 1.14 5.86 2.37 9.36 5.07 2.56 3.09 0.438 14.5 49.12 291 18.9 7.85
584.92 1.13 5.88 2.6 9.19 5.17 0.147 -- 0.459 14.5 47.52 326 19 7.32
577.59 1.12 5.93 2.44 9.66 5.92 -- 1.02 0.362 14.6 34.34 389 18.9 7.02
564.85 1.11 5.92 2.65 10.5 6.74 -- -- 0.436 14.6 35.74 450 19 6.1
2113.57 2.14 5.92 2.24 -- 4.79 -- 0.687 0.248 -- 50.45 1353 20.8 6.66
811.48 1.34 5.95 2.58 5.36 -- -0.567 -- 0.201 15.2 -- -- -- --
812.51 1.33 5.95 2.57 5.36 -- -- -- 0.197 15.2 -- -- -- --
746.73 1.27 5.92 2.63 -- 6.06 -- -- 0.279 -- -182.8 1011 23.3 14.7
707.17 1.24 5.97 -- 10.4 6.78 -- -- 0.103 14.6 54.45 485 19 5.62
2442.23 2.31 5.96 2.34 -- -- -- -- 0.0566 -- -- -- -- --
986.59 1.47 6.02 -- 5.31 -- -- -- -0.089 15.2 -- -- -- --
906.08 1.4 6.01 -- -- 6.26 -- -- -0.00683 -- -169.2 1046 22.3 16
2586.94 2.37 6.02 -- -- -- -- -- -0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 584.96 radiation 20.0 14400 > th dose dependent rect. 7 1
16 586.80 humidity 50.0 270 > th dose dependent rect. 19 8
18 588.51 radiation 10.0 14400 < th dose independent rect. 17 22
33 589.17 precipitation 0.1 43200 > th dose independent rect. 13 4
34 589.19 radiation 10.0 14400 < th dose independent rect. 10 23
38 589.31 radiation 30.0 14400 > th dose dependent rect. 14 1
42 589.64 radiation 10.0 14400 < th dose independent rect. 24 15
52 589.76 precipitation 0.1 43200 < th dose independent rect. 13 4
53 589.76 precipitation 0.1 43200 < th dose dependent rect. 13 4
56 589.80 radiation 10.0 14400 < th dose independent sin 4 NA
59 589.85 radiation 10.0 14400 < th dose independent rect. 13 23
80 590.29 radiation 10.0 14400 < th dose independent rect. 24 19
89 590.32 radiation 10.0 14400 < th dose independent no NA NA
98 590.33 radiation 10.0 14400 < th dose independent rect. 2 23
99 590.33 radiation 10.0 14400 < th dose independent rect. 4 23
167 590.79 precipitation 0.1 43200 > th dose dependent rect. 14 3
203 591.30 radiation 20.0 14400 < th dose independent rect. 16 17
208 591.51 radiation 30.0 14400 > th dose dependent rect. 14 18
215 591.77 radiation 20.0 14400 < th dose independent rect. 23 9
247 592.03 radiation 20.0 14400 < th dose independent rect. 7 1
322 593.75 radiation 20.0 14400 > th dose independent rect. 17 15
323 593.76 radiation 20.0 14400 > th dose independent rect. 6 2
391 594.88 humidity 60.0 43200 > th dose independent rect. 14 1
403 594.97 radiation 10.0 14400 < th dose independent rect. 10 9
418 595.18 radiation 40.0 14400 < th dose dependent rect. 18 14
439 595.43 humidity 80.0 43200 > th dose independent rect. 14 1
445 595.50 radiation 40.0 14400 < th dose dependent rect. 23 9
462 595.63 radiation 20.0 14400 < th dose dependent rect. 11 21
470 595.70 wind 9.0 43200 > th dose dependent rect. 18 1
473 595.71 radiation 40.0 14400 < th dose dependent rect. 7 1
480 595.76 radiation 1.0 14400 > th dose dependent rect. 14 1
501 595.92 humidity 90.0 43200 > th dose dependent rect. 20 1
502 595.93 radiation 40.0 14400 > th dose dependent rect. 13 22
504 595.96 humidity 80.0 43200 < th dose independent rect. 13 1
510 595.99 radiation 40.0 14400 < th dose independent rect. 14 15
526 596.17 radiation 40.0 14400 < th dose independent rect. 14 4
609 596.83 radiation 10.0 14400 < th dose independent rect. 13 3
614 596.92 radiation 40.0 14400 > th dose dependent sin 12 NA
625 596.99 temperature 25.0 14400 > th dose dependent rect. 23 1
636 597.06 radiation 10.0 14400 > th dose dependent sin 12 NA
645 597.14 humidity 90.0 43200 < th dose dependent rect. 14 1
785 597.55 radiation 20.0 14400 < th dose independent rect. 11 3
814 597.84 precipitation 0.1 43200 > th dose dependent rect. 19 22
817 597.86 radiation 20.0 14400 < th dose dependent rect. 16 23
900 598.18 precipitation 0.1 43200 > th dose dependent rect. 19 12
964 598.44 precipitation 0.1 43200 > th dose dependent rect. 19 15