Os02g0572600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase PKN/PRK1, effector domain containing protein.
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Os02g0572600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase PKN/PRK1, effector domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191 | 0.649 | 2.95 | -0.396 | 0.202 | 1.69 | -0.914 | 2.67 | -0.0523 | 6.51 | 0.1482 | 1442 | -- | -- |
| 193.98 | 0.649 | 2.88 | -0.198 | 0.206 | 1.02 | -0.908 | -- | 0.0364 | 5.91 | 2.229 | 1416 | -- | -- |
| 193.08 | 0.647 | 2.94 | -0.408 | 0.199 | 1.7 | -- | 2.68 | -0.0451 | 6.43 | 0.14 | 1441 | -- | -- |
| 195.73 | 0.652 | 2.89 | -0.271 | 0.199 | 0.918 | -- | -- | 0.0143 | 5.7 | 2.15 | 1419 | -- | -- |
| 195.02 | 0.65 | 2.94 | -0.395 | -- | 1.63 | -- | 2.55 | -0.0451 | -- | 0.09 | 1436 | -- | -- |
| 204.5 | 0.67 | 2.93 | -0.46 | 0.193 | -- | -0.949 | -- | -0.134 | 6.25 | -- | -- | -- | -- |
| 206.71 | 0.673 | 2.92 | -0.471 | 0.189 | -- | -- | -- | -0.131 | 6.56 | -- | -- | -- | -- |
| 197.61 | 0.655 | 2.89 | -0.252 | -- | 0.934 | -- | -- | 0.00696 | -- | 1.717 | 1419 | -- | -- |
| 197.31 | 0.654 | 2.88 | -- | 0.192 | 1.07 | -- | -- | 0.0452 | 5.91 | 1.622 | 1425 | -- | -- |
| 208.56 | 0.675 | 2.93 | -0.466 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 212.55 | 0.682 | 2.91 | -- | 0.183 | -- | -- | -- | -0.0782 | 6.71 | -- | -- | -- | -- |
| 197.99 | 0.655 | 2.89 | -- | -- | 1.09 | -- | -- | 0.0283 | -- | 0.17 | 1436 | -- | -- |
| 214.29 | 0.683 | 2.92 | -- | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.64 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 2 | 179.64 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 180.19 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 9 |
| 4 | 180.22 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 5 | 180.25 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 4 |
| 6 | 180.26 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 12 | 180.29 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 4 |
| 13 | 180.29 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 17 | 180.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 26 | 180.37 | wind | 5.0 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 47 | 180.62 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 48 | 180.62 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 50 | 180.75 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 87 | 183.00 | wind | 5.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 95 | 183.61 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 112 | 184.71 | wind | 5.0 | 90 | > th | dose dependent | rect. | 19 | 7 |
| 120 | 184.99 | wind | 7.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 132 | 185.51 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 202 | 187.03 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 204 | 187.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 225 | 187.21 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 228 | 187.30 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 229 | 187.30 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 12 |
| 233 | 187.37 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 282 | 188.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 283 | 188.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 285 | 188.14 | wind | 5.0 | 90 | > th | dose independent | sin | 9 | NA |
| 298 | 188.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 315 | 188.73 | wind | 5.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 375 | 189.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 377 | 189.84 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 391 | 190.15 | wind | 7.0 | 90 | < th | dose independent | sin | 11 | NA |
| 395 | 190.31 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 420 | 190.63 | wind | 7.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 423 | 190.65 | wind | 7.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 431 | 190.74 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 477 | 191.43 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 483 | 191.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 490 | 191.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 495 | 191.52 | wind | 5.0 | 90 | > th | dose independent | rect. | 18 | 19 |
| 498 | 191.53 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 6 |
| 499 | 191.53 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 500 | 191.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 542 | 191.75 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 545 | 191.75 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 550 | 191.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 651 | 192.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 655 | 192.11 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 670 | 192.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 671 | 192.16 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 683 | 192.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 685 | 192.21 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 690 | 192.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 699 | 192.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 700 | 192.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 704 | 192.33 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 706 | 192.33 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 714 | 192.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 718 | 192.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 721 | 192.40 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 754 | 192.47 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 760 | 192.51 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 764 | 192.53 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 780 | 192.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 788 | 192.63 | wind | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 793 | 192.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 800 | 192.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 804 | 192.67 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 806 | 192.68 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 811 | 192.69 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 816 | 192.71 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 850 | 192.76 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 909 | 192.89 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 911 | 192.90 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 946 | 193.01 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 953 | 193.01 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 968 | 193.05 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 981 | 193.07 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |