Os02g0572200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0572200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.56 | 0.464 | 6.8 | 0.519 | 0.458 | 0.349 | 1.01 | 5.61 | 0.15 | 2.94 | 0.92 | 1438 | -- | -- |
| 118.62 | 0.507 | 6.71 | 1.16 | 0.43 | 0.481 | 0.909 | -- | 0.388 | 3.11 | 22.21 | 4321 | -- | -- |
| 95.02 | 0.454 | 6.8 | 0.523 | 0.48 | -0.223 | -- | 5.51 | 0.0802 | 2.76 | 2.06 | 1494 | -- | -- |
| 116.15 | 0.502 | 6.69 | 1.29 | 0.376 | 0.56 | -- | -- | 0.435 | 3.04 | 21.55 | 11814 | -- | -- |
| 107.65 | 0.483 | 6.77 | 0.629 | -- | -0.0606 | -- | 5.02 | 0.143 | -- | 2.146 | 1495 | -- | -- |
| 125.26 | 0.525 | 6.71 | 1.29 | 0.414 | -- | 1.05 | -- | 0.32 | 2.93 | -- | -- | -- | -- |
| 128.97 | 0.532 | 6.71 | 1.26 | 0.419 | -- | -- | -- | 0.314 | 3.05 | -- | -- | -- | -- |
| 125.37 | 0.521 | 6.67 | 1.34 | -- | 0.562 | -- | -- | 0.469 | -- | 20.02 | 12140 | -- | -- |
| 141.55 | 0.554 | 6.69 | -- | 0.369 | 0.697 | -- | -- | 0.32 | 3.69 | 38.99 | 24509 | -- | -- |
| 139.02 | 0.551 | 6.71 | 1.28 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 171.14 | 0.612 | 6.74 | -- | 0.444 | -- | -- | -- | 0.173 | 3.07 | -- | -- | -- | -- |
| 148.09 | 0.567 | 6.71 | -- | -- | 1.03 | -- | -- | 0.297 | -- | 38.99 | 29357 | -- | -- |
| 182.42 | 0.63 | 6.74 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 3 | 94.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 7 | 94.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 9 | 94.74 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 11 | 94.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 13 | 94.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 15 | 94.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 16 | 94.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 21 | 94.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 24 | 94.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 31 | 95.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 33 | 95.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 34 | 95.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 43 | 95.16 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 49 | 95.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 160 | 97.25 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 163 | 97.36 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 172 | 97.49 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 186 | 97.57 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 188 | 97.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 216 | 97.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 231 | 97.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 245 | 97.70 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 281 | 97.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 293 | 97.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 311 | 97.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 317 | 97.94 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 318 | 97.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 393 | 98.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 425 | 98.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 456 | 98.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 480 | 98.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 485 | 98.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 577 | 98.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 582 | 98.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 629 | 98.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 648 | 98.77 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 756 | 99.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 873 | 99.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |