Os02g0571100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ent-copalyl diphosphate synthase.
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Os02g0571100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ent-copalyl diphosphate synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.04 | 0.562 | 11.3 | 0.664 | 0.0789 | -4.66 | 1.08 | -6.99 | 0.375 | 6.42 | 0.7052 | 1459 | -- | -- |
| 157.7 | 0.585 | 11.4 | 0.154 | 0.102 | -3 | 1.2 | -- | 0.325 | 7.33 | 1.922 | 1459 | -- | -- |
| 145.2 | 0.561 | 11.3 | 0.795 | 0.0808 | -4.96 | -- | -8.32 | 0.431 | 4.38 | 0.5964 | 1459 | -- | -- |
| 161.03 | 0.591 | 11.5 | 0.0927 | 0.155 | -3.21 | -- | -- | 0.26 | 4.01 | 1.444 | 1471 | -- | -- |
| 145.18 | 0.561 | 11.3 | 0.758 | -- | -4.93 | -- | -8.04 | 0.393 | -- | 0.5967 | 1458 | -- | -- |
| 266.63 | 0.766 | 11.4 | 0.733 | 0.194 | -- | 1.16 | -- | 0.667 | 7.22 | -- | -- | -- | -- |
| 269.25 | 0.768 | 11.4 | 0.762 | 0.226 | -- | -- | -- | 0.668 | 9.47 | -- | -- | -- | -- |
| 161.38 | 0.592 | 11.5 | 0.105 | -- | -3.16 | -- | -- | 0.265 | -- | 1.69 | 1462 | -- | -- |
| 161.03 | 0.591 | 11.5 | -- | 0.155 | -3.27 | -- | -- | 0.246 | 3.52 | 1.475 | 1473 | -- | -- |
| 272.25 | 0.771 | 11.4 | 0.76 | -- | -- | -- | -- | 0.668 | -- | -- | -- | -- | -- |
| 284.55 | 0.789 | 11.4 | -- | 0.225 | -- | -- | -- | 0.583 | 9.21 | -- | -- | -- | -- |
| 161.62 | 0.592 | 11.5 | -- | -- | -3.21 | -- | -- | 0.254 | -- | 1.616 | 1462 | -- | -- |
| 287.5 | 0.791 | 11.4 | -- | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 11 | 141.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 16 | 144.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 25 | 146.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 30 | 146.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 37 | 146.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 49 | 147.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 50 | 147.01 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 53 | 147.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 56 | 147.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 63 | 147.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 109 | 148.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 110 | 148.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 118 | 148.69 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 126 | 149.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 160 | 150.72 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 168 | 151.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 169 | 151.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 172 | 151.22 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 186 | 151.63 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 202 | 151.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 215 | 152.11 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 226 | 152.31 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 242 | 152.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 252 | 152.59 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 254 | 152.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 262 | 152.67 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 275 | 152.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 280 | 152.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 283 | 152.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 285 | 152.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 294 | 152.84 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 10 |
| 297 | 152.85 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 7 |
| 325 | 153.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 363 | 153.37 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 376 | 153.44 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 381 | 153.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 401 | 153.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 407 | 153.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 409 | 153.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 427 | 153.63 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 428 | 153.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 429 | 153.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 450 | 153.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 13 |
| 454 | 153.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 10 |
| 475 | 153.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 481 | 153.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 483 | 153.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 490 | 153.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 500 | 153.83 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 511 | 153.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 514 | 153.87 | radiation | 1 | 4320 | < th | dose dependent | sin | 16 | NA |
| 531 | 153.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 546 | 153.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 548 | 153.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 584 | 154.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 682 | 154.30 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 754 | 154.50 | radiation | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 832 | 154.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 851 | 154.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 971 | 154.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 975 | 154.97 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 987 | 155.01 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |