Os02g0570400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ent-kaurene synthase 1A.
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Os02g0570400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ent-kaurene synthase 1A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 518.59 | 1.07 | 4.05 | 4.19 | 0.482 | -4.37 | -0.124 | -0.637 | 1.24 | 23.6 | 15.04 | 4628 | -- | -- |
| 518.96 | 1.06 | 4.03 | 4.33 | 0.48 | -4.33 | -0.12 | -- | 1.27 | 23.7 | 15.2 | 4618 | -- | -- |
| 518.65 | 1.06 | 4.05 | 4.2 | 0.482 | -4.37 | -- | -0.656 | 1.24 | 23.7 | 15 | 4629 | -- | -- |
| 519.02 | 1.06 | 4.02 | 4.34 | 0.48 | -4.33 | -- | -- | 1.28 | 23.7 | 15.2 | 4618 | -- | -- |
| 533.19 | 1.08 | 4.04 | 4.21 | -- | -4.34 | -- | -0.575 | 1.24 | -- | 15 | 4601 | -- | -- |
| 886.38 | 1.4 | 4.22 | 2.23 | 0.382 | -- | -0.334 | -- | 0.39 | 23.2 | -- | -- | -- | -- |
| 886.82 | 1.39 | 4.22 | 2.25 | 0.383 | -- | -- | -- | 0.39 | 23.5 | -- | -- | -- | -- |
| 533.45 | 1.08 | 4.01 | 4.34 | -- | -4.31 | -- | -- | 1.28 | -- | 15.2 | 4600 | -- | -- |
| 852.35 | 1.36 | 4.19 | -- | 0.554 | -2.94 | -- | -- | 0.568 | 22.7 | -2.716 | 1870 | -- | -- |
| 896.04 | 1.4 | 4.21 | 2.26 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 1019.91 | 1.49 | 4.28 | -- | 0.409 | -- | -- | -- | 0.14 | 23.8 | -- | -- | -- | -- |
| 836.81 | 1.35 | 4.17 | -- | -- | -2.28 | -- | -- | 0.57 | -- | 21.9 | 1616 | -- | -- |
| 1030.45 | 1.5 | 4.27 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 507.51 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 2 | 511.26 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 513.70 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 15 | 515.79 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 19 |
| 20 | 516.21 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 22 | 516.25 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 28 | 516.35 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 44 | 517.38 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 58 | 518.03 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 18 |
| 61 | 518.07 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 21 |
| 104 | 518.97 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 115 | 519.11 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 123 | 519.16 | temperature | 15 | 4320 | > th | dose dependent | sin | 4 | NA |
| 133 | 519.36 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 143 | 519.52 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 226 | 520.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 356 | 521.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 19 |
| 390 | 522.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 22 |
| 426 | 522.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 430 | 522.33 | temperature | 15 | 4320 | > th | dose dependent | sin | 18 | NA |
| 431 | 522.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 470 | 522.58 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 474 | 522.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 520 | 522.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 591 | 523.39 | temperature | 30 | 4320 | < th | dose dependent | sin | 4 | NA |
| 646 | 523.96 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 682 | 524.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 737 | 524.54 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 8 |
| 801 | 525.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 811 | 525.25 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 815 | 525.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 845 | 525.50 | temperature | 30 | 4320 | < th | dose dependent | sin | 18 | NA |
| 849 | 525.54 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 886 | 525.82 | radiation | 1 | 14400 | < th | dose independent | sin | 13 | NA |
| 978 | 526.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 995 | 526.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 18 |