Os02g0569000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os02g0569000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.75 | 0.609 | 5.88 | -5.12 | 1.12 | -99.2 | 1.47 | -293 | 1.2 | 5.72 | 1.257 | 1329 | 11 | 1.04 |
| 262.96 | 0.761 | 8.26 | 2.62 | 1.03 | -0.495 | 2.06 | -- | 1.34 | 5.81 | 1.257 | 1329 | 11 | 1.04 |
| 172.94 | 0.612 | 5.89 | -5.12 | 1.11 | -99.1 | -- | -293 | 1.2 | 5.63 | 1.367 | 1329 | 11 | 1.04 |
| 204.22 | 0.666 | 8.41 | 2.1 | 1.23 | -2.22 | -- | -- | 1.09 | 5.44 | 0.006117 | 1314 | 12.1 | 0.0484 |
| 238.22 | 0.719 | 5.93 | -5 | -- | -99.1 | -- | -293 | 1.22 | -- | 1.33 | 1333 | 11 | 1.02 |
| 263.2 | 0.761 | 8.26 | 2.63 | 1.03 | -- | 2.06 | -- | 1.34 | 5.81 | -- | -- | -- | -- |
| 273.46 | 0.774 | 8.26 | 2.64 | 1.04 | -- | -- | -- | 1.33 | 5.64 | -- | -- | -- | -- |
| 246.24 | 0.731 | 8.31 | 2.28 | -- | -2.86 | -- | -- | 1.25 | -- | 3.382 | 1319 | 11.9 | 0.224 |
| 327.73 | 0.843 | 8.39 | -- | 1.2 | -2.75 | -- | -- | 1.07 | 5.27 | 1.046 | 1964 | 13.2 | 0.223 |
| 329.9 | 0.849 | 8.28 | 2.67 | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
| 457.19 | 1 | 8.33 | -- | 1.09 | -- | -- | -- | 1.04 | 5.53 | -- | -- | -- | -- |
| 359.61 | 0.883 | 8.37 | -- | -- | -2.71 | -- | -- | 0.921 | -- | 0.157 | 2777 | 13.1 | 0.788 |
| 518.48 | 1.06 | 8.34 | -- | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.29 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 173.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 178.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 4 | 178.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 179.43 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 6 | 179.43 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 37 | 181.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 39 | 181.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 43 | 182.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 77 | 199.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 78 | 200.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 79 | 200.50 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 82 | 201.94 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 84 | 201.94 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 86 | 201.94 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 137 | 201.94 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 139 | 201.94 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 141 | 201.94 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 201 | 202.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 202 | 202.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 205 | 203.88 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 209 | 204.38 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 215 | 205.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 217 | 205.78 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 222 | 207.05 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 229 | 207.87 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 232 | 208.04 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 247 | 210.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 269 | 211.69 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 271 | 211.78 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 291 | 213.65 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 293 | 213.85 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 352 | 215.47 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 354 | 215.50 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 362 | 215.87 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 374 | 216.14 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 377 | 216.17 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 398 | 216.73 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 416 | 217.10 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 417 | 217.10 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 629 | 219.49 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 636 | 219.57 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 639 | 219.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 673 | 220.02 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 706 | 220.41 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 716 | 220.49 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 798 | 221.13 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 847 | 221.56 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 852 | 221.58 | humidity | 60.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 908 | 222.09 | wind | 7.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 911 | 222.17 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 936 | 222.35 | wind | 7.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 985 | 222.65 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |