Os02g0567100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os02g0567100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.28 | 0.259 | 14 | 0.86 | 0.521 | -0.84 | 0.0345 | 0.458 | 0.0676 | 1.28 | 13.38 | 473 | -- | -- |
| 30.42 | 0.257 | 14 | 0.782 | 0.525 | -0.83 | 0.0331 | -- | 0.0469 | 1.27 | 13.84 | 479 | -- | -- |
| 30.28 | 0.256 | 14 | 0.86 | 0.523 | -0.841 | -- | 0.458 | 0.0677 | 1.27 | 13.42 | 476 | -- | -- |
| 30.42 | 0.257 | 14 | 0.783 | 0.524 | -0.83 | -- | -- | 0.0472 | 1.27 | 13.86 | 480 | -- | -- |
| 36.9 | 0.283 | 14 | 0.936 | -- | -1.16 | -- | 0.534 | 0.129 | -- | 17 | 46 | -- | -- |
| 38.18 | 0.29 | 14.1 | 0.599 | 0.61 | -- | 0.15 | -- | -0.0753 | 2.7 | -- | -- | -- | -- |
| 38.26 | 0.29 | 14.1 | 0.596 | 0.611 | -- | -- | -- | -0.0762 | 2.68 | -- | -- | -- | -- |
| 37.06 | 0.284 | 14 | 0.844 | -- | -1.07 | -- | -- | 0.105 | -- | 17.92 | 47 | -- | -- |
| 44.86 | 0.312 | 14.1 | -- | 0.557 | -0.466 | -- | -- | -0.0855 | 1.99 | 11.57 | 446 | -- | -- |
| 60 | 0.362 | 14.1 | 0.622 | -- | -- | -- | -- | -0.0607 | -- | -- | -- | -- | -- |
| 47.61 | 0.323 | 14.1 | -- | 0.622 | -- | -- | -- | -0.142 | 2.69 | -- | -- | -- | -- |
| 54.52 | 0.344 | 14 | -- | -- | -0.822 | -- | -- | -0.0162 | -- | 19.37 | 35 | -- | -- |
| 70.19 | 0.391 | 14.1 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 30 | 26.73 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 17 |
| 33 | 26.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 43 | 26.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 82 | 27.51 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 91 | 27.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 144 | 28.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 172 | 28.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 238 | 28.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 283 | 28.87 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 343 | 29.14 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 379 | 29.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 382 | 29.28 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 6 |
| 425 | 29.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 447 | 29.51 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 4 |
| 458 | 29.54 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 17 |
| 529 | 29.76 | humidity | 90 | 270 | < th | dose independent | rect. | 14 | 5 |
| 571 | 29.87 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 591 | 29.92 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 592 | 29.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 613 | 29.96 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 4 |
| 626 | 29.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 656 | 30.01 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 665 | 30.03 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 16 |
| 668 | 30.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 685 | 30.07 | wind | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 697 | 30.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 724 | 30.12 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 20 |
| 767 | 30.19 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 768 | 30.19 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |
| 776 | 30.20 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 16 | 2 |
| 830 | 30.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 851 | 30.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 887 | 30.31 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 997 | 30.41 | wind | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |