Os02g0565400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0565400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.73 | 0.372 | 8.76 | 0.927 | 1.12 | 0.195 | -1.51 | -2.24 | -0.0275 | 18.5 | 19.9 | 275 | -- | -- |
| 67.04 | 0.381 | 8.78 | 0.969 | 1.16 | 1.35 | -1.39 | -- | 0.021 | 18.5 | 18.26 | 1978 | -- | -- |
| 62.35 | 0.368 | 8.73 | 1.15 | 1.07 | 0.566 | -- | -2.52 | 0.04 | 18.6 | 19.1 | 1626 | -- | -- |
| 65.27 | 0.376 | 8.77 | 1.05 | 1.04 | 1.34 | -- | -- | 0.0448 | 18.7 | 18.1 | 3077 | -- | -- |
| 124.3 | 0.519 | 8.71 | 1.16 | -- | 0.519 | -- | -2.8 | 0.0307 | -- | 19.19 | 1612 | -- | -- |
| 84.43 | 0.431 | 8.83 | 0.478 | 1.11 | -- | -0.975 | -- | -0.178 | 18.7 | -- | -- | -- | -- |
| 86.79 | 0.436 | 8.83 | 0.495 | 1.11 | -- | -- | -- | -0.18 | 18.6 | -- | -- | -- | -- |
| 123.63 | 0.518 | 8.75 | 1.09 | -- | 1.51 | -- | -- | 0.0412 | -- | 18 | 2882 | -- | -- |
| 85.72 | 0.434 | 8.83 | -- | 1.09 | 0.69 | -- | -- | -0.202 | 18.4 | 18.1 | 3077 | -- | -- |
| 150.42 | 0.573 | 8.81 | 0.468 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 93.23 | 0.452 | 8.84 | -- | 1.1 | -- | -- | -- | -0.235 | 18.6 | -- | -- | -- | -- |
| 144.24 | 0.559 | 8.8 | -- | -- | 1.03 | -- | -- | -0.171 | -- | 17.31 | 2903 | -- | -- |
| 156.19 | 0.583 | 8.82 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 2 | 60.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 3 | 60.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 4 | 60.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 91 | 62.08 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 116 | 62.24 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 131 | 62.30 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 23 |
| 146 | 62.38 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 155 | 62.42 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 193 | 62.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 197 | 62.61 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 251 | 62.76 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 261 | 62.80 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 289 | 62.90 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 295 | 62.92 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 303 | 62.93 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 329 | 62.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 331 | 62.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 376 | 63.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 397 | 63.10 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 423 | 63.16 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 429 | 63.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 436 | 63.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 446 | 63.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 468 | 63.21 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 23 |
| 470 | 63.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 471 | 63.22 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 475 | 63.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 483 | 63.23 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 496 | 63.25 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 508 | 63.26 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 529 | 63.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 542 | 63.29 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 559 | 63.30 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 585 | 63.33 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 596 | 63.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 607 | 63.35 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 618 | 63.35 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 648 | 63.38 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 662 | 63.39 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 680 | 63.41 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 685 | 63.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 713 | 63.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 726 | 63.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 768 | 63.46 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 771 | 63.46 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 789 | 63.47 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 817 | 63.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 822 | 63.49 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 840 | 63.50 | wind | 9 | 43200 | > th | dose independent | sin | 11 | NA |
| 842 | 63.50 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 856 | 63.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 894 | 63.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 922 | 63.55 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 972 | 63.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 994 | 63.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |