Os02g0564600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Late embryogenesis abundant protein 3 family protein.
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Os02g0564600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Late embryogenesis abundant protein 3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.77 | 0.314 | 2.54 | 2.92 | 0.189 | -37.6 | 0.0905 | 230 | 0.00715 | 10.8 | 994.5 | 809 | -- | -- |
| 1080.68 | 1.53 | 3.12 | -0.471 | 0.45 | -31.5 | 3.04 | -- | -0.399 | 19.1 | 994.5 | 105 | -- | -- |
| 44.81 | 0.312 | 2.54 | 2.92 | 0.188 | -37.5 | -- | 230 | 0.00723 | 10.8 | 994.5 | 809 | -- | -- |
| 51.89 | 0.335 | 3.04 | -0.0462 | 0.161 | 0.618 | -- | -- | -0.00256 | 7.91 | 996.2 | 1742 | -- | -- |
| 46.97 | 0.319 | 2.54 | 2.95 | -- | -37.9 | -- | 232 | 0.00551 | -- | 994.5 | 809 | -- | -- |
| 53.48 | 0.343 | 3.04 | -0.0464 | 0.175 | -- | 0.0445 | -- | -0.0034 | 10.1 | -- | -- | -- | -- |
| 53.49 | 0.342 | 3.04 | -0.0447 | 0.175 | -- | -- | -- | -0.0033 | 10.1 | -- | -- | -- | -- |
| 52.35 | 0.337 | 3.04 | -0.0714 | -- | 0.727 | -- | -- | 0.0148 | -- | 996.6 | 906 | -- | -- |
| 51.26 | 0.333 | 3.04 | -- | 0.163 | 0.576 | -- | -- | 0.00777 | 10.3 | 996.4 | 1452 | -- | -- |
| 55.34 | 0.348 | 3.04 | -0.047 | -- | -- | -- | -- | -0.00351 | -- | -- | -- | -- | -- |
| 53.54 | 0.342 | 3.04 | -- | 0.175 | -- | -- | -- | 0.00168 | 10.1 | -- | -- | -- | -- |
| 52.49 | 0.337 | 3.04 | -- | -- | 0.728 | -- | -- | 0.0169 | -- | 996.6 | 906 | -- | -- |
| 55.39 | 0.347 | 3.04 | -- | -- | -- | -- | -- | 0.0017 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 37.44 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 1 |
| 5 | 37.78 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 1 |
| 8 | 37.78 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 59 | 42.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 89 | 44.75 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 92 | 44.77 | atmosphere | 995 | 720 | < th | dose independent | rect. | 16 | 1 |
| 94 | 44.77 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 24 | 1 |
| 99 | 44.77 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 219 | 45.28 | atmosphere | 995 | 720 | < th | dose dependent | sin | 9 | NA |
| 235 | 45.59 | atmosphere | 995 | 720 | < th | dose independent | sin | 9 | NA |
| 265 | 46.20 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 395 | 46.51 | atmosphere | 1010 | 10 | > th | dose dependent | sin | 22 | NA |
| 843 | 47.15 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 869 | 47.28 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 932 | 47.33 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 933 | 47.33 | humidity | 60 | 270 | < th | dose dependent | rect. | 10 | 1 |
| 968 | 47.40 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 11 | 1 |