FiT-DB / Search/ Help/ Sample detail

Os02g0564000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0126) R2 : 0.76
β1 : -1.04 (0.046) R2dD : 0.278 R2D : 0.242
β2 : 1.02 (0.0328) R2dC : 0.509 R2C : 0.487
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0268) R2dN8 : 0.0183 R2N8 : -0.0161
σ : 0.236
deviance : 25.41
__
_____
C
peak time of C : 6.07
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.67 0.224 11.4 -1.27 1.01 0.0618 0.19 1.18 -0.199 6.04 20 1659 -- --
24.21 0.231 11.4 -1.1 1.02 -0.271 0.174 -- -0.157 5.98 18.39 4982 -- --
22.74 0.222 11.4 -1.27 1.01 0.0607 -- 1.17 -0.199 6.05 20 1710 -- --
24.19 0.229 11.4 -1.18 1.02 -0.339 -- -- -0.173 6.11 16 9542 -- --
75.63 0.405 11.4 -1.26 -- 0.0562 -- 1.22 -0.163 -- 20.3 1717 -- --
25.33 0.236 11.4 -1.04 1.02 -- 0.18 -- -0.136 6.06 -- -- -- --
25.41 0.236 11.4 -1.04 1.02 -- -- -- -0.136 6.07 -- -- -- --
77.08 0.409 11.4 -1.17 -- -0.387 -- -- -0.17 -- 17.2 4231 -- --
33.71 0.27 11.3 -- 0.96 0.737 -- -- 0.167 6.4 19.4 36030 -- --
78.93 0.415 11.4 -1.01 -- -- -- -- -0.113 -- -- -- -- --
53.72 0.343 11.3 -- 1 -- -- -- -0.0208 6.12 -- -- -- --
68.63 0.386 11.3 -- -- 0.752 -- -- 0.113 -- 26.4 417 -- --
105.69 0.48 11.4 -- -- -- -- -- -0.00158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.40 temperature 20 1440 < th dose independent rect. 1 2
3 22.43 temperature 20 1440 > th dose independent rect. 1 2
7 22.48 humidity 90 14400 > th dose independent rect. 20 1
8 22.49 humidity 90 14400 > th dose dependent rect. 19 6
9 22.51 humidity 90 14400 > th dose dependent sin 16 NA
11 22.51 humidity 90 14400 > th dose dependent rect. 13 14
13 22.52 humidity 90 14400 > th dose dependent rect. 17 9
18 22.53 temperature 20 1440 < th dose independent rect. 18 10
49 22.56 humidity 90 14400 > th dose dependent rect. 2 23
50 22.56 humidity 90 14400 > th dose dependent rect. 4 23
53 22.57 temperature 20 1440 > th dose independent rect. 18 10
55 22.57 humidity 90 14400 > th dose dependent no NA NA
65 22.57 humidity 90 14400 > th dose dependent rect. 24 22
66 22.57 humidity 90 14400 > th dose dependent rect. 6 23
70 22.57 humidity 90 14400 > th dose dependent rect. 13 23
96 22.58 humidity 90 14400 > th dose dependent rect. 19 23
99 22.59 temperature 25 1440 < th dose dependent rect. 7 1
141 22.61 humidity 90 14400 > th dose independent rect. 19 5
154 22.62 temperature 20 1440 < th dose independent rect. 12 16
169 22.63 humidity 90 14400 < th dose independent rect. 19 3
184 22.64 temperature 20 1440 < th dose independent sin 12 NA
191 22.64 temperature 20 1440 < th dose independent rect. 18 14
226 22.66 temperature 20 1440 > th dose independent rect. 12 16
229 22.66 humidity 90 14400 > th dose dependent rect. 21 1
246 22.67 temperature 20 1440 > th dose independent rect. 18 14
252 22.67 temperature 20 1440 < th dose independent rect. 12 20
253 22.67 temperature 20 1440 < th dose independent rect. 18 20
265 22.68 temperature 20 1440 > th dose independent sin 12 NA
282 22.68 temperature 20 1440 < th dose independent rect. 6 22
306 22.69 temperature 20 1440 > th dose independent rect. 12 20
336 22.70 temperature 20 1440 > th dose independent rect. 18 19
374 22.71 temperature 20 1440 > th dose independent rect. 6 22
377 22.71 humidity 80 14400 > th dose dependent rect. 18 2
378 22.71 temperature 25 1440 < th dose dependent rect. 6 3
394 22.72 temperature 20 1440 < th dose independent rect. 22 16
451 22.73 temperature 10 1440 > th dose dependent rect. 7 1
493 22.74 humidity 90 14400 > th dose dependent sin 3 NA
503 22.75 humidity 90 43200 > th dose independent rect. 10 2
509 22.75 temperature 20 1440 < th dose independent rect. 22 12
527 22.75 temperature 20 1440 < th dose independent rect. 22 22
547 22.75 temperature 10 720 > th dose dependent rect. 17 21
560 22.76 temperature 20 1440 > th dose independent rect. 23 15
594 22.77 temperature 20 1440 < th dose independent no NA NA
598 22.77 temperature 20 1440 < th dose independent rect. 24 9
631 22.77 temperature 10 720 > th dose dependent rect. 17 17
652 22.78 temperature 20 1440 > th dose independent rect. 22 22
670 22.79 temperature 20 1440 > th dose independent no NA NA
671 22.79 humidity 90 14400 > th dose independent sin 16 NA
680 22.79 temperature 20 1440 > th dose independent rect. 23 11
719 22.80 temperature 20 1440 > th dose independent rect. 24 9
776 22.81 humidity 90 43200 > th dose dependent rect. 10 2
778 22.81 humidity 90 14400 > th dose dependent rect. 4 7
784 22.82 temperature 20 1440 > th dose independent rect. 6 2
816 22.83 humidity 90 43200 < th dose independent rect. 11 1
829 22.83 humidity 90 14400 > th dose independent rect. 10 17
842 22.83 wind 9 14400 > th dose dependent rect. 7 3
853 22.84 temperature 20 1440 < th dose independent rect. 6 2
902 22.85 humidity 90 14400 > th dose independent rect. 17 19
913 22.85 humidity 90 14400 > th dose independent rect. 3 22
914 22.85 humidity 90 14400 > th dose independent rect. 6 22
916 22.85 humidity 90 14400 > th dose independent rect. 10 22
942 22.86 humidity 90 14400 > th dose independent no NA NA
989 22.86 humidity 90 14400 > th dose independent rect. 23 23
990 22.86 wind 1 43200 < th dose dependent rect. 18 1