Os02g0559300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0559300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.8 | 0.625 | 3.15 | 0.872 | 0.101 | -2.07 | 0.586 | -9.36 | 0.0309 | 14.9 | 6.563 | 4322 | 18.3 | 4.01 |
| 250.75 | 0.738 | 3.13 | 0.821 | 0.208 | -0.98 | 0.574 | -- | 0.0264 | 14.2 | 6.151 | 4318 | 18.3 | 3.9 |
| 176.47 | 0.619 | 3.15 | 0.909 | 0.117 | -2.14 | -- | -9.73 | 0.0469 | 15 | 6.604 | 4323 | 18.3 | 4.22 |
| 213.1 | 0.68 | 3.11 | 0.935 | 0.167 | -1.13 | -- | -- | 0.0806 | 14.3 | 6.1 | 4307 | 20.2 | 0.534 |
| 176.88 | 0.619 | 3.15 | 0.897 | -- | -2.17 | -- | -9.95 | 0.0272 | -- | 6.606 | 4324 | 18.3 | 4.23 |
| 274.53 | 0.777 | 3.1 | 0.64 | 0.128 | -- | 0.558 | -- | -0.0657 | 13.6 | -- | -- | -- | -- |
| 275.69 | 0.778 | 3.1 | 0.659 | 0.136 | -- | -- | -- | -0.0619 | 14.7 | -- | -- | -- | -- |
| 213.39 | 0.68 | 3.1 | 0.943 | -- | -1.14 | -- | -- | 0.087 | -- | 6.1 | 4334 | 20.2 | 0.534 |
| 203.89 | 0.665 | 3.03 | -- | 0.0284 | -2.03 | -- | -- | -0.0121 | 2.93 | 6.196 | 4328 | 20.2 | 0.232 |
| 276.77 | 0.777 | 3.1 | 0.654 | -- | -- | -- | -- | -0.0653 | -- | -- | -- | -- | -- |
| 287.15 | 0.793 | 3.11 | -- | 0.123 | -- | -- | -- | -0.135 | 14.7 | -- | -- | -- | -- |
| 200 | 0.659 | 3.06 | -- | -- | -2.08 | -- | -- | -0.0304 | -- | 6.198 | 4308 | 20.2 | 0.3 |
| 288.04 | 0.792 | 3.11 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.66 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 6 | 182.83 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 12 | 183.73 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 18 | 184.61 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 25 | 185.00 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 38 | 185.72 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 68 | 186.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 87 | 186.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 149 | 189.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 156 | 190.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 166 | 191.57 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 171 | 191.76 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 174 | 191.88 | wind | 7 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 175 | 191.90 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 180 | 192.31 | wind | 7 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 188 | 192.61 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 189 | 192.61 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 219 | 193.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 259 | 195.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 272 | 196.13 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 278 | 196.35 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 292 | 196.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 335 | 197.17 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 337 | 197.19 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 338 | 197.19 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 340 | 197.21 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 387 | 198.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 393 | 198.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 500 | 200.15 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 1 |
| 514 | 200.53 | humidity | 90 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 549 | 200.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 613 | 201.53 | wind | 5 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 614 | 201.54 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 616 | 201.57 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 657 | 202.02 | humidity | 90 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 664 | 202.12 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 686 | 202.29 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 700 | 202.30 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 713 | 202.35 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 862 | 202.88 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 986 | 203.12 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 991 | 203.12 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 992 | 203.12 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 993 | 203.12 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |