Os02g0557300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1G.
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Os02g0557300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1G.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.54 | 0.237 | 11 | -0.0948 | 0.453 | 0.628 | 0.0955 | -2.14 | 0.0853 | 22.6 | 30.15 | 5910 | -- | -- |
| 26.34 | 0.239 | 10.9 | 0.37 | 0.425 | 0.411 | 0.13 | -- | 0.105 | 22.3 | 29.6 | 5922 | -- | -- |
| 25.49 | 0.235 | 11 | -0.106 | 0.449 | 0.649 | -- | -2.26 | 0.0792 | 22.8 | 30.15 | 6007 | -- | -- |
| 26.32 | 0.239 | 10.9 | 0.365 | 0.431 | 0.407 | -- | -- | 0.129 | 22.5 | 29.85 | 5908 | -- | -- |
| 37.14 | 0.284 | 11 | -0.0744 | -- | 0.663 | -- | -1.86 | 0.0589 | -- | 29.9 | 6309 | -- | -- |
| 34.27 | 0.274 | 10.9 | 0.501 | 0.426 | -- | 0.209 | -- | 0.107 | 22.7 | -- | -- | -- | -- |
| 34.45 | 0.275 | 10.9 | 0.493 | 0.426 | -- | -- | -- | 0.107 | 22.7 | -- | -- | -- | -- |
| 35.83 | 0.279 | 10.9 | 0.317 | -- | 0.493 | -- | -- | 0.0548 | -- | 28.6 | 5211 | -- | -- |
| 29.67 | 0.254 | 10.9 | -- | 0.437 | 0.478 | -- | -- | 0.0769 | 22.6 | 29.5 | 5929 | -- | -- |
| 45.62 | 0.316 | 10.9 | 0.501 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 40.87 | 0.299 | 11 | -- | 0.429 | -- | -- | -- | 0.0521 | 22.7 | -- | -- | -- | -- |
| 38.19 | 0.288 | 11 | -- | -- | 0.628 | -- | -- | -0.00486 | -- | 27.7 | 5228 | -- | -- |
| 52.25 | 0.337 | 10.9 | -- | -- | -- | -- | -- | 0.0536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 2 | 26.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 3 | 26.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 4 | 26.21 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 8 | 26.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 17 | 26.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 18 | 26.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 19 | 26.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 20 | 26.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 22 | 26.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 26 | 26.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 32 | 26.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 45 | 26.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 60 | 26.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 12 | 14 |
| 61 | 26.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 62 | 26.47 | temperature | 10 | 4320 | > th | dose dependent | sin | 17 | NA |
| 68 | 26.47 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 91 | 26.48 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 160 | 26.50 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 164 | 26.50 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 244 | 26.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 272 | 26.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 277 | 26.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 392 | 26.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 424 | 26.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 428 | 26.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 431 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 454 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 22 |
| 466 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 467 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 468 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 469 | 26.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 473 | 26.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 512 | 26.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 661 | 26.65 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 713 | 26.66 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 740 | 26.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 837 | 26.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 838 | 26.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 840 | 26.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 842 | 26.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 843 | 26.69 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 938 | 26.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 976 | 26.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |