Os02g0555900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP3Ka.
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Os02g0555900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP3Ka.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95 | 0.458 | 9.4 | -0.415 | 1.85 | -1.13 | -0.555 | -1.15 | -0.334 | 8.16 | 2.426 | 1452 | -- | -- |
| 95.34 | 0.455 | 9.41 | -0.512 | 1.84 | -1.04 | -0.482 | -- | -0.368 | 7.96 | 3.419 | 1486 | -- | -- |
| 95.85 | 0.456 | 9.41 | -0.443 | 1.85 | -1.1 | -- | -0.922 | -0.334 | 8.14 | 2.755 | 1452 | -- | -- |
| 95.83 | 0.456 | 9.43 | -0.563 | 1.8 | -1.09 | -- | -- | -0.378 | 7.93 | 3.29 | 1492 | -- | -- |
| 221.01 | 0.696 | 9.44 | -0.373 | -- | -0.873 | -- | 0.717 | -0.224 | -- | 3.037 | 1536 | -- | -- |
| 109.2 | 0.49 | 9.39 | -0.362 | 1.88 | -- | -0.571 | -- | -0.215 | 8.19 | -- | -- | -- | -- |
| 110.19 | 0.492 | 9.39 | -0.379 | 1.88 | -- | -- | -- | -0.215 | 8.17 | -- | -- | -- | -- |
| 223.9 | 0.7 | 9.44 | -0.366 | -- | -0.873 | -- | -- | -0.223 | -- | 3.29 | 1492 | -- | -- |
| 103.2 | 0.473 | 9.42 | -- | 1.82 | -0.877 | -- | -- | -0.321 | 7.85 | 5.537 | 1525 | -- | -- |
| 305.62 | 0.817 | 9.44 | -0.364 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 113.97 | 0.499 | 9.38 | -- | 1.88 | -- | -- | -- | -0.173 | 8.18 | -- | -- | -- | -- |
| 224.88 | 0.701 | 9.43 | -- | -- | -0.905 | -- | -- | -0.188 | -- | 5.537 | 1525 | -- | -- |
| 309.11 | 0.821 | 9.43 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 2 | 91.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 3 | 91.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 4 | 91.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 17 | 91.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 18 | 91.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 41 | 92.31 | radiation | 1 | 1440 | < th | dose independent | sin | 3 | NA |
| 47 | 92.39 | radiation | 1 | 1440 | > th | dose independent | sin | 3 | NA |
| 88 | 92.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 91 | 92.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 99 | 92.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 101 | 92.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 136 | 93.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 137 | 93.54 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 141 | 93.61 | radiation | 1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 152 | 93.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 159 | 93.79 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 197 | 94.12 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 341 | 94.72 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 413 | 94.81 | temperature | 30 | 14400 | < th | dose independent | sin | 18 | NA |
| 425 | 94.83 | temperature | 30 | 14400 | > th | dose independent | sin | 17 | NA |
| 540 | 94.92 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 636 | 94.97 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 746 | 94.99 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 842 | 95.00 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 878 | 95.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 937 | 95.18 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 938 | 95.18 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 15 |
| 949 | 95.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 986 | 95.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 15 |
| 995 | 95.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 21 |