Os02g0555600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid-binding ACT domain containing protein.
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Os02g0555600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid-binding ACT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.31 | 0.365 | 11.5 | 0.0512 | 0.779 | 0.67 | 0.147 | -0.242 | -0.418 | 6.43 | 10.01 | 1427 | -- | -- |
| 60.44 | 0.362 | 11.5 | 0.0546 | 0.779 | 0.676 | 0.137 | -- | -0.418 | 6.47 | 10 | 1426 | -- | -- |
| 60.35 | 0.362 | 11.5 | 0.053 | 0.78 | 0.67 | -- | -0.246 | -0.418 | 6.4 | 10.01 | 1425 | -- | -- |
| 60.46 | 0.362 | 11.5 | 0.0736 | 0.792 | 0.671 | -- | -- | -0.407 | 6.34 | 10.19 | 1437 | -- | -- |
| 92 | 0.447 | 11.5 | 0.0429 | -- | 0.691 | -- | -0.193 | -0.42 | -- | 10.21 | 1435 | -- | -- |
| 72.93 | 0.4 | 11.5 | 0.298 | 0.788 | -- | 0.14 | -- | -0.207 | 6.23 | -- | -- | -- | -- |
| 72.98 | 0.4 | 11.5 | 0.3 | 0.789 | -- | -- | -- | -0.207 | 6.2 | -- | -- | -- | -- |
| 91.91 | 0.446 | 11.5 | 0.114 | -- | 0.689 | -- | -- | -0.416 | -- | 10.21 | 1437 | -- | -- |
| 60.66 | 0.363 | 11.5 | -- | 0.776 | 0.681 | -- | -- | -0.414 | 6.35 | 10.21 | 1437 | -- | -- |
| 105.23 | 0.479 | 11.5 | 0.321 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 75.35 | 0.406 | 11.5 | -- | 0.793 | -- | -- | -- | -0.241 | 6.18 | -- | -- | -- | -- |
| 92.15 | 0.447 | 11.5 | -- | -- | 0.702 | -- | -- | -0.412 | -- | 10.2 | 1438 | -- | -- |
| 107.95 | 0.485 | 11.5 | -- | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 2 | 58.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 3 | 58.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 5 | 58.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 6 | 58.89 | temperature | 20 | 43200 | < th | dose independent | sin | 22 | NA |
| 8 | 58.91 | temperature | 20 | 43200 | > th | dose independent | sin | 23 | NA |
| 9 | 58.92 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 10 | 58.92 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 14 | 58.93 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 33 | 58.97 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 44 | 58.99 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 62 | 59.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 81 | 59.05 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 90 | 59.06 | temperature | 20 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 98 | 59.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 107 | 59.08 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 121 | 59.09 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 171 | 59.11 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 177 | 59.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 185 | 59.12 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 197 | 59.13 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 214 | 59.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 226 | 59.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 246 | 59.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 248 | 59.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 255 | 59.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 350 | 59.17 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 364 | 59.18 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 373 | 59.18 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 400 | 59.19 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 405 | 59.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 435 | 59.19 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 462 | 59.20 | temperature | 20 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 493 | 59.21 | temperature | 20 | 43200 | < th | dose independent | sin | 7 | NA |
| 546 | 59.22 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 624 | 59.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 645 | 59.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 650 | 59.24 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 686 | 59.25 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 713 | 59.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 783 | 59.27 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 796 | 59.28 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 853 | 59.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 881 | 59.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 886 | 59.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 920 | 59.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 934 | 59.33 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 948 | 59.33 | temperature | 20 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 951 | 59.34 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 982 | 59.35 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 989 | 59.36 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |