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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0555300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.055) R2 : 0.73
β1 : 5.96 (0.202) R2dD : 0.538 R2D : 0.426
β2 : 1.77 (0.171) R2dC : 0.0951 R2C : -0.132
β3 : -3.56 (0.191) R2dE : 0.304 R2E : 0.0792
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.44 (0.738) R2dD*E : 0.0128 R2D*E : 0.0168
γ1 : 1.22 (0.118) R2dN8 : 0.0871 R2N8 : -0.0143
σ : 1.03
deviance : 486.51
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 10.65
memory length : 246
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 8.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
483.08 1.03 5.27 5.92 1.85 -3.61 1.47 -4.43 1.21 16.3 10.24 252 6.03 8.9
507.53 1.05 5.23 6.08 1.85 -3.71 -0.744 -- 1.29 16.2 11.72 229 6 9.17
486.51 1.03 5.26 5.96 1.77 -3.56 -- -3.44 1.22 16.4 10.65 246 6.03 8.88
509.23 1.05 5.24 6.05 1.79 -3.68 -- -- 1.26 16.3 12.08 228 6.02 9.15
552.67 1.09 5.23 5.84 -- -2.79 -- -3.03 1.23 -- 14.81 50 6.17 9.28
591.93 1.14 5.3 5.86 2.15 -- 2.69 -- 1.13 22.3 -- -- -- --
620.97 1.17 5.31 5.76 2.14 -- -- -- 1.12 22.2 -- -- -- --
564.33 1.11 5.19 5.98 -- -2.97 -- -- 1.4 -- 16.39 54 6.11 9.33
1436.66 1.77 5.41 -- 1.18 -2.56 -- -- 0.565 17.4 0.0126 191 6.02 9.36
899.56 1.4 5.25 5.79 -- -- -- -- 1.12 -- -- -- -- --
1494.51 1.81 5.45 -- 2.17 -- -- -- 0.479 22.4 -- -- -- --
1462.46 1.78 5.36 -- -- -1.98 -- -- 0.651 -- -28.6 10 6.39 9.5
1783.13 1.97 5.4 -- -- -- -- -- 0.483 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 486.14 temperature 10.0 270 > th dose dependent rect. 6 9
41 510.12 radiation 10.0 30 < th dose dependent rect. 5 16
48 511.52 radiation 10.0 30 < th dose independent rect. 5 16
61 512.78 humidity 90.0 270 < th dose independent rect. 5 10
80 514.44 humidity 80.0 90 < th dose independent rect. 23 18
96 515.58 humidity 70.0 90 > th dose dependent rect. 4 15
130 517.97 humidity 80.0 90 > th dose dependent rect. 4 13
145 518.98 temperature 25.0 90 > th dose dependent rect. 21 19
155 519.43 temperature 25.0 270 > th dose independent rect. 8 6
163 519.79 temperature 30.0 90 < th dose dependent rect. 4 15
168 520.06 temperature 25.0 90 > th dose dependent rect. 4 12
178 520.37 temperature 25.0 90 > th dose dependent rect. 1 15
200 521.16 radiation 30.0 90 < th dose dependent rect. 13 22
211 521.47 humidity 80.0 90 < th dose independent rect. 9 8
236 522.03 temperature 30.0 10 < th dose independent rect. 5 16
263 522.90 humidity 70.0 90 > th dose dependent sin 3 NA
267 523.02 radiation 10.0 90 > th dose independent rect. 8 23
299 523.79 radiation 1.0 270 > th dose independent rect. 6 9
313 524.18 temperature 10.0 90 > th dose dependent rect. 20 21
327 524.36 radiation 10.0 90 < th dose dependent sin 0 NA
331 524.48 humidity 80.0 90 > th dose independent rect. 4 13
342 524.75 wind 1.0 90 > th dose independent rect. 20 21
346 524.81 temperature 30.0 90 < th dose dependent rect. 4 13
347 524.82 atmosphere 1000.0 10 > th dose independent rect. 5 16
352 524.86 radiation 30.0 90 < th dose dependent rect. 15 20
364 525.11 radiation 40.0 270 < th dose independent rect. 2 17
404 525.68 atmosphere 995.0 270 > th dose independent rect. 15 15
421 526.01 humidity 80.0 270 > th dose dependent rect. 2 13
432 526.15 wind 3.0 270 < th dose dependent rect. 3 3
433 526.17 radiation 10.0 90 > th dose independent sin 23 NA
447 526.49 radiation 40.0 1440 < th dose dependent rect. 22 7
457 526.71 precipitation 0.1 270 < th dose independent rect. 6 9
458 526.71 precipitation 0.1 270 < th dose dependent rect. 6 9
462 526.77 humidity 90.0 270 > th dose independent rect. 2 15
469 527.00 humidity 70.0 90 > th dose independent rect. 19 9
470 527.00 temperature 25.0 90 > th dose dependent sin 3 NA
489 527.45 temperature 15.0 270 > th dose independent rect. 6 9
493 527.48 temperature 25.0 10 > th dose dependent sin 2 NA
549 528.48 wind 9.0 90 < th dose dependent rect. 4 16
560 528.69 wind 1.0 270 > th dose independent rect. 6 9
570 528.81 atmosphere 1015.0 270 < th dose independent rect. 6 9
571 528.81 temperature 10.0 270 > th dose independent rect. 15 15
588 529.06 precipitation 0.1 270 < th dose independent rect. 15 15
590 529.06 precipitation 0.1 270 < th dose dependent rect. 15 15
604 529.25 wind 9.0 270 < th dose independent rect. 6 9
615 529.35 radiation 40.0 90 < th dose independent rect. 4 16
624 529.42 radiation 40.0 270 < th dose independent rect. 15 15
629 529.49 wind 9.0 270 < th dose independent rect. 15 15
633 529.52 radiation 10.0 10 < th dose dependent rect. 9 12
669 530.00 radiation 10.0 90 > th dose independent rect. 9 8
671 530.02 radiation 10.0 90 < th dose dependent rect. 7 12
719 530.57 atmosphere 1015.0 90 < th dose dependent rect. 9 18
727 530.70 precipitation 0.1 90 < th dose independent rect. 20 8
729 530.70 precipitation 0.1 90 < th dose dependent rect. 20 8
734 530.73 humidity 80.0 270 > th dose dependent rect. 2 7
742 530.83 radiation 30.0 90 < th dose dependent rect. 17 17
744 530.85 radiation 10.0 90 < th dose dependent rect. 9 10
753 530.91 radiation 10.0 10 > th dose independent rect. 9 9
768 530.96 precipitation 0.1 10 < th dose independent rect. 5 16
771 530.96 precipitation 0.1 10 < th dose dependent rect. 5 16
772 531.00 radiation 1.0 30 < th dose dependent rect. 21 8
775 531.02 radiation 10.0 10 < th dose independent rect. 9 12
776 531.04 atmosphere 995.0 270 > th dose independent rect. 6 9
779 531.08 temperature 15.0 90 > th dose independent rect. 20 8
785 531.13 humidity 90.0 270 > th dose independent rect. 2 7
786 531.13 radiation 10.0 90 < th dose independent rect. 13 21
787 531.14 atmosphere 1015.0 10 < th dose dependent rect. 9 20
788 531.16 wind 9.0 90 < th dose independent rect. 20 8
793 531.17 temperature 30.0 90 < th dose independent rect. 20 8
794 531.17 humidity 50.0 90 > th dose independent rect. 20 8
797 531.17 atmosphere 995.0 90 > th dose independent rect. 20 8
798 531.17 radiation 1.0 90 < th dose independent rect. 20 8
803 531.17 temperature 10.0 90 > th dose independent rect. 4 16
804 531.17 atmosphere 1015.0 90 < th dose independent rect. 4 16
813 531.18 wind 5.0 270 < th dose dependent rect. 1 8
846 531.34 temperature 25.0 270 > th dose dependent sin 6 NA
854 531.41 radiation 10.0 90 < th dose dependent rect. 11 8
916 531.67 atmosphere 1015.0 90 < th dose independent rect. 20 8
917 531.67 humidity 70.0 90 > th dose dependent rect. 4 5
923 531.71 wind 9.0 10 < th dose independent rect. 5 16
925 531.72 radiation 20.0 10 < th dose dependent rect. 13 8
946 531.77 radiation 10.0 90 < th dose independent rect. 11 23
953 531.81 atmosphere 1015.0 10 < th dose independent rect. 21 8