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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0555200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC-domain protein 5-11.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0271) R2 : 0.00275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0639 (0.057) R2dN8 : 0.00355 R2N8 : 0.00275
σ : 0.51
deviance : 119.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.57 0.469 3.56 1.12 0.256 -0.518 0.84 1.35 0.338 5.03 19.5 5241 -- --
100.51 0.467 3.59 0.916 0.291 -0.567 0.689 -- 0.321 4.67 17.94 10995 -- --
101.16 0.468 3.56 1.13 0.27 -0.522 -- 1.35 0.34 4.27 18.95 5339 -- --
101.6 0.469 3.59 0.937 0.285 -0.712 -- -- 0.367 4.54 4.918 10997 -- --
104.73 0.477 3.57 1.15 -- -0.524 -- 1.47 0.339 -- 20.45 4946 -- --
107.5 0.486 3.64 0.491 0.246 -- 0.877 -- 0.117 5.33 -- -- -- --
109.31 0.49 3.65 0.491 0.254 -- -- -- 0.113 4.68 -- -- -- --
105.32 0.478 3.6 0.947 -- -0.672 -- -- 0.355 -- 6.552 11928 -- --
113.62 0.496 3.66 -- 0.253 -0.212 -- -- 0.0777 4.35 26.31 6448 -- --
112.72 0.496 3.65 0.501 -- -- -- -- 0.119 -- -- -- -- --
115.67 0.503 3.66 -- 0.263 -- -- -- 0.0581 4.63 -- -- -- --
114.76 0.499 3.65 -- -- -0.399 -- -- 0.108 -- 23.1 250 -- --
119.34 0.51 3.66 -- -- -- -- -- 0.0639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.60 precipitation 1e-01 14400 < th dose independent rect. 13 1
2 95.60 precipitation 1e-01 14400 < th dose dependent rect. 13 1
3 95.66 precipitation 1e-01 14400 > th dose independent rect. 13 1
4 96.06 precipitation 1e-01 14400 > th dose dependent rect. 13 1
5 96.26 humidity 8e+01 43200 < th dose independent rect. 2 6
8 96.46 radiation 1e+00 14400 > th dose independent rect. 18 1
22 96.61 humidity 8e+01 43200 > th dose independent rect. 2 6
24 96.72 humidity 8e+01 43200 > th dose independent rect. 3 1
29 96.80 humidity 8e+01 43200 < th dose independent rect. 3 1
31 96.84 humidity 8e+01 43200 < th dose dependent rect. 23 10
45 96.96 humidity 8e+01 43200 < th dose dependent rect. 1 7
48 97.00 wind 1e+00 43200 > th dose independent rect. 19 1
58 97.03 radiation 1e+00 14400 < th dose independent rect. 18 11
64 97.08 radiation 1e+00 14400 < th dose independent rect. 18 6
73 97.10 radiation 1e+00 14400 < th dose independent rect. 18 3
76 97.11 radiation 1e+00 14400 < th dose independent rect. 18 1
81 97.11 radiation 1e+00 43200 < th dose dependent rect. 3 1
84 97.12 precipitation 1e-01 43200 > th dose dependent rect. 19 1
104 97.22 radiation 1e+00 14400 < th dose dependent rect. 7 10
110 97.27 precipitation 1e-01 43200 > th dose independent rect. 19 1
111 97.27 humidity 8e+01 43200 > th dose dependent rect. 17 1
116 97.31 precipitation 1e-01 43200 < th dose independent rect. 19 1
117 97.31 precipitation 1e-01 43200 < th dose dependent rect. 19 1
128 97.38 humidity 8e+01 43200 < th dose independent rect. 23 1
136 97.43 radiation 1e+00 14400 < th dose dependent rect. 19 10
147 97.51 wind 1e+00 14400 < th dose dependent rect. 10 1
153 97.55 humidity 8e+01 43200 > th dose independent rect. 14 4
157 97.57 humidity 7e+01 43200 > th dose dependent rect. 14 4
159 97.60 humidity 8e+01 43200 > th dose independent rect. 16 1
161 97.60 radiation 1e+00 14400 > th dose independent rect. 7 8
162 97.60 humidity 9e+01 43200 > th dose dependent rect. 14 1
166 97.63 radiation 1e+00 14400 < th dose independent rect. 7 8
167 97.63 radiation 4e+01 4320 < th dose dependent rect. 18 6
169 97.64 wind 3e+00 43200 < th dose dependent rect. 24 4
170 97.64 humidity 9e+01 90 > th dose dependent rect. 6 17
173 97.67 humidity 8e+01 43200 < th dose independent rect. 16 1
178 97.69 humidity 9e+01 43200 < th dose independent rect. 16 5
179 97.69 wind 3e+00 43200 < th dose dependent rect. 8 2
183 97.70 radiation 1e+00 14400 < th dose dependent rect. 11 18
194 97.73 radiation 1e+00 14400 < th dose dependent rect. 24 5
201 97.75 radiation 1e+00 14400 < th dose dependent rect. 18 7
203 97.75 radiation 1e+00 14400 < th dose dependent rect. 11 12
219 97.76 humidity 8e+01 43200 < th dose dependent rect. 2 1
220 97.76 radiation 1e+00 14400 < th dose dependent rect. 18 5
222 97.76 radiation 1e+00 14400 < th dose dependent rect. 11 8
233 97.78 humidity 8e+01 43200 < th dose independent rect. 14 4
235 97.78 radiation 1e+00 14400 < th dose dependent rect. 18 1
271 97.82 radiation 1e+00 14400 < th dose dependent rect. 16 13
272 97.83 wind 3e+00 43200 > th dose independent rect. 9 1
281 97.84 radiation 1e+00 14400 < th dose dependent sin 17 NA
283 97.84 radiation 1e+00 14400 < th dose dependent rect. 16 8
296 97.85 radiation 1e+00 14400 < th dose dependent rect. 16 3
305 97.86 wind 3e+00 43200 < th dose independent rect. 9 1
308 97.86 wind 3e+00 43200 < th dose dependent rect. 8 4
321 97.87 radiation 1e+00 14400 < th dose dependent rect. 16 1
336 97.89 radiation 1e+00 14400 < th dose dependent rect. 7 22
337 97.90 wind 1e+00 43200 > th dose independent rect. 24 2
365 97.93 temperature 2e+01 14400 > th dose independent rect. 18 1
369 97.93 wind 1e+00 43200 < th dose dependent rect. 8 21
381 97.95 radiation 1e+00 14400 < th dose dependent rect. 7 16
384 97.95 wind 1e+00 43200 < th dose dependent rect. 10 19
389 97.96 radiation 1e+00 14400 < th dose dependent rect. 7 12
404 97.99 wind 3e+00 43200 > th dose independent rect. 8 6
418 98.00 wind 3e+00 43200 < th dose independent rect. 8 5
419 98.00 humidity 9e+01 43200 > th dose independent rect. 16 5
433 98.02 wind 5e+00 43200 < th dose dependent rect. 11 1
439 98.03 atmosphere 1e+03 43200 > th dose independent rect. 20 2
467 98.04 wind 1e+00 14400 > th dose dependent rect. 8 4
474 98.05 atmosphere 1e+03 43200 < th dose independent rect. 20 2
477 98.05 radiation 1e+00 14400 < th dose independent rect. 11 8
486 98.05 radiation 1e+00 14400 < th dose independent rect. 11 17
487 98.05 wind 7e+00 14400 < th dose dependent rect. 9 3
496 98.06 radiation 1e+00 14400 > th dose independent rect. 11 8
642 98.14 radiation 1e+00 14400 > th dose independent sin 17 NA
643 98.14 radiation 1e+00 14400 < th dose independent sin 18 NA
645 98.14 radiation 1e+00 14400 < th dose independent rect. 7 12
696 98.17 humidity 8e+01 43200 < th dose dependent rect. 5 1
719 98.19 humidity 9e+01 43200 > th dose independent rect. 19 2
781 98.23 radiation 1e+00 14400 > th dose independent rect. 7 12
856 98.26 wind 7e+00 43200 < th dose dependent rect. 7 9
861 98.27 wind 7e+00 43200 < th dose dependent rect. 6 11
926 98.31 wind 3e+00 43200 > th dose independent rect. 3 14
939 98.31 wind 7e+00 43200 < th dose dependent rect. 3 15
940 98.31 wind 7e+00 43200 < th dose dependent rect. 3 18
945 98.32 wind 7e+00 43200 < th dose dependent sin 1 NA
977 98.35 wind 3e+00 43200 > th dose independent rect. 3 20