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Os02g0554300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SAC1-like protein AtSAC1b (SAC domain protein 6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0147) R2 : 0.32
β1 : 0.776 (0.0539) R2dD : 0.321 R2D : 0.32
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00412 (0.0314) R2dN8 : 3.43e-05 R2N8 : -0.00108
σ : 0.276
deviance : 34.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.39 0.165 10.7 0.992 0.567 -0.363 -0.246 0.373 0.112 22.5 21.4 1363 -- --
12.5 0.165 10.7 0.872 0.575 -0.345 -0.271 -- 0.0796 22.4 20.73 1392 -- --
12.63 0.166 10.7 0.993 0.565 -0.36 -- 0.345 0.111 22.4 21.41 1399 -- --
12.7 0.166 10.7 0.894 0.565 -0.345 -- -- 0.0836 22.4 20.69 1391 -- --
27.1 0.244 10.7 1.02 -- -0.595 -- 0.846 0.133 -- 21.02 5889 -- --
16.37 0.19 10.7 0.758 0.548 -- -0.244 -- 0.00217 22.3 -- -- -- --
16.61 0.191 10.7 0.768 0.55 -- -- -- 0.00294 22.2 -- -- -- --
26.86 0.242 10.7 0.907 -- -0.662 -- -- 0.103 -- 16.98 4519 -- --
31.76 0.264 10.7 -- 0.528 -0.155 -- -- -0.0596 22 19.67 758 -- --
34.95 0.276 10.7 0.776 -- -- -- -- 0.00412 -- -- -- -- --
32.15 0.265 10.7 -- 0.554 -- -- -- -0.0826 22.3 -- -- -- --
43.39 0.307 10.7 -- -- 0.429 -- -- -0.216 -- 14.24 47520 -- --
50.82 0.333 10.7 -- -- -- -- -- -0.082 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.14 precipitation 0.1 43200 > th dose dependent rect. 20 1
2 11.19 radiation 1.0 43200 < th dose dependent rect. 23 5
6 11.28 radiation 1.0 43200 < th dose dependent rect. 21 7
27 11.45 precipitation 0.1 43200 > th dose independent rect. 20 1
28 11.46 precipitation 0.1 43200 < th dose independent rect. 20 1
29 11.46 precipitation 0.1 43200 < th dose dependent rect. 20 1
31 11.54 wind 9.0 43200 > th dose independent rect. 19 2
32 11.56 wind 9.0 43200 > th dose dependent rect. 19 4
33 11.56 wind 9.0 43200 > th dose dependent rect. 19 6
34 11.57 wind 9.0 43200 < th dose independent rect. 19 2
38 11.58 wind 9.0 43200 > th dose dependent rect. 19 2
55 11.73 wind 9.0 43200 > th dose dependent rect. 17 8
56 11.74 wind 9.0 43200 > th dose independent rect. 19 6
60 11.74 wind 9.0 43200 > th dose dependent rect. 17 12
62 11.75 atmosphere 995.0 43200 > th dose independent rect. 17 1
80 11.78 wind 9.0 43200 > th dose independent rect. 19 8
81 11.79 atmosphere 995.0 43200 < th dose independent rect. 16 1
91 11.79 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
92 11.79 atmosphere 995.0 43200 < th dose dependent rect. 16 1
118 11.83 precipitation 0.1 43200 > th dose dependent rect. 17 2
120 11.84 wind 9.0 43200 < th dose independent rect. 18 7
121 11.84 wind 9.0 43200 < th dose independent rect. 18 9
132 11.86 wind 9.0 43200 > th dose dependent rect. 17 4
147 11.91 wind 5.0 43200 > th dose independent rect. 20 1
157 11.93 atmosphere 1000.0 43200 > th dose independent rect. 12 1
159 11.94 atmosphere 1000.0 43200 < th dose independent rect. 3 1
167 11.95 atmosphere 1000.0 43200 < th dose independent rect. 12 1
173 11.96 atmosphere 1000.0 43200 > th dose independent rect. 2 2
187 11.97 atmosphere 995.0 43200 > th dose independent rect. 15 7
190 11.98 wind 5.0 43200 < th dose independent rect. 20 1
229 12.01 atmosphere 1000.0 43200 > th dose independent rect. 20 1
264 12.02 atmosphere 1000.0 43200 < th dose independent rect. 20 1
294 12.03 precipitation 0.1 43200 > th dose independent rect. 17 1
295 12.03 precipitation 0.1 43200 < th dose independent rect. 17 1
315 12.03 atmosphere 1000.0 43200 > th dose independent rect. 20 17
316 12.03 atmosphere 1000.0 43200 < th dose independent rect. 20 17
318 12.03 precipitation 0.1 43200 < th dose dependent rect. 17 1
347 12.04 atmosphere 1000.0 43200 < th dose independent rect. 22 15
378 12.05 atmosphere 1000.0 43200 > th dose independent rect. 23 14
395 12.06 atmosphere 1000.0 43200 < th dose independent sin 8 NA
428 12.07 atmosphere 1000.0 43200 > th dose independent sin 8 NA
455 12.07 atmosphere 1005.0 43200 < th dose dependent rect. 23 1
460 12.07 temperature 20.0 1440 > th dose dependent rect. 16 13
486 12.08 precipitation 0.1 43200 > th dose dependent rect. 17 5
522 12.09 atmosphere 1005.0 43200 < th dose dependent rect. 12 1
558 12.10 atmosphere 1000.0 43200 < th dose dependent sin 12 NA
641 12.12 temperature 20.0 1440 > th dose dependent sin 14 NA
695 12.13 temperature 20.0 1440 > th dose dependent rect. 17 9
704 12.13 atmosphere 1005.0 43200 < th dose dependent rect. 22 16
745 12.14 atmosphere 1000.0 43200 < th dose independent rect. 10 18
758 12.14 temperature 20.0 1440 > th dose dependent rect. 20 1
766 12.14 atmosphere 1005.0 43200 < th dose dependent rect. 23 14
799 12.15 atmosphere 1000.0 43200 > th dose independent rect. 10 18
865 12.16 atmosphere 1000.0 43200 < th dose independent no NA NA
937 12.16 atmosphere 1005.0 43200 < th dose dependent sin 7 NA
945 12.16 temperature 20.0 1440 > th dose dependent rect. 18 4
991 12.17 atmosphere 1000.0 43200 > th dose independent no NA NA