Os02g0552200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UvrB, C-terminal UvrC-binding domain containing protein.
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Os02g0552200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UvrB, C-terminal UvrC-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.4 | 0.578 | 5.03 | 1.64 | 1.02 | -1.88 | 0.865 | 1.02 | 0.0508 | 20.6 | 24.26 | 4635 | -- | -- |
| 151.69 | 0.574 | 5.05 | 1.45 | 1.01 | -1.79 | 0.863 | -- | 0.0579 | 20.6 | 23.26 | 4654 | -- | -- |
| 153.68 | 0.577 | 5.02 | 1.67 | 1.01 | -1.88 | -- | 1.09 | 0.102 | 20.5 | 23.74 | 4641 | -- | -- |
| 153.96 | 0.578 | 5.05 | 1.38 | 1.01 | -1.78 | -- | -- | 0.0569 | 20.5 | 23.41 | 4645 | -- | -- |
| 208.1 | 0.672 | 4.98 | 1.59 | -- | -1.85 | -- | 0.672 | 0.15 | -- | 22.89 | 4447 | -- | -- |
| 253.06 | 0.746 | 5.1 | 0.713 | 0.957 | -- | 0.754 | -- | -0.159 | 20.4 | -- | -- | -- | -- |
| 254.82 | 0.748 | 5.1 | 0.691 | 0.958 | -- | -- | -- | -0.158 | 20.3 | -- | -- | -- | -- |
| 208.12 | 0.672 | 5.01 | 1.4 | -- | -1.78 | -- | -- | 0.0967 | -- | 22.81 | 4438 | -- | -- |
| 194.59 | 0.65 | 5.13 | -- | 1.02 | -1.39 | -- | -- | -0.294 | 20.5 | 26.4 | 4663 | -- | -- |
| 305.74 | 0.817 | 5.07 | 0.685 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 267.39 | 0.765 | 5.12 | -- | 0.955 | -- | -- | -- | -0.235 | 20.4 | -- | -- | -- | -- |
| 245.53 | 0.73 | 5.1 | -- | -- | -1.2 | -- | -- | -0.287 | -- | 27.89 | 5774 | -- | -- |
| 318.11 | 0.832 | 5.09 | -- | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 3 | 153.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 21 |
| 4 | 153.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 8 | 153.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 16 | 153.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 17 | 153.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 46 | 153.82 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 48 | 153.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 108 | 154.03 | temperature | 25 | 4320 | > th | dose dependent | sin | 19 | NA |
| 110 | 154.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 16 |
| 115 | 154.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 138 | 154.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 150 | 154.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 182 | 154.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 232 | 154.49 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 331 | 155.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 334 | 155.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 340 | 155.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 378 | 155.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 430 | 155.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 22 |
| 475 | 156.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 484 | 156.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 487 | 156.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 488 | 156.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 500 | 156.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 503 | 156.10 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 524 | 156.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 537 | 156.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 552 | 156.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 561 | 156.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 12 |
| 591 | 156.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 599 | 156.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 608 | 156.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 633 | 156.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 648 | 156.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 682 | 156.71 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 716 | 156.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 720 | 156.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 814 | 157.08 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 849 | 157.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 862 | 157.21 | temperature | 10 | 4320 | > th | dose dependent | sin | 21 | NA |
| 908 | 157.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 13 |
| 917 | 157.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 941 | 157.47 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |