Os02g0552100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0552100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.53 | 0.202 | 8.97 | 0.372 | 0.0854 | 0.344 | -0.259 | -0.358 | 0.154 | 23.8 | 29.58 | 1604 | -- | -- |
| 18.48 | 0.2 | 8.98 | 0.299 | 0.128 | 0.355 | -0.236 | -- | 0.175 | 23.7 | 28.81 | 2184 | -- | -- |
| 18.64 | 0.201 | 8.97 | 0.386 | 0.102 | 0.331 | -- | -0.183 | 0.192 | 1.08 | 29.1 | 1503 | -- | -- |
| 18.61 | 0.201 | 8.97 | 0.311 | 0.0841 | 0.311 | -- | -- | 0.18 | 0.593 | 29 | 1544 | -- | -- |
| 19.08 | 0.203 | 8.97 | 0.345 | -- | 0.318 | -- | -0.126 | 0.189 | -- | 29.02 | 1570 | -- | -- |
| 22.36 | 0.222 | 8.98 | 0.2 | 0.079 | -- | -0.282 | -- | 0.136 | 0.275 | -- | -- | -- | -- |
| 22.7 | 0.223 | 8.98 | 0.211 | 0.0809 | -- | -- | -- | 0.137 | 0.807 | -- | -- | -- | -- |
| 19.09 | 0.203 | 8.97 | 0.311 | -- | 0.305 | -- | -- | 0.18 | -- | 29.07 | 1571 | -- | -- |
| 21 | 0.213 | 8.98 | -- | 0.0885 | 0.246 | -- | -- | 0.144 | 0.369 | 28.9 | 1545 | -- | -- |
| 23.1 | 0.225 | 8.98 | 0.214 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 23.87 | 0.229 | 8.99 | -- | 0.0842 | -- | -- | -- | 0.114 | 0.92 | -- | -- | -- | -- |
| 21.48 | 0.216 | 8.98 | -- | -- | 0.251 | -- | -- | 0.139 | -- | 29.02 | 1594 | -- | -- |
| 24.31 | 0.23 | 8.99 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.28 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 4 | 17.30 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 21 | 17.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 54 | 17.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 70 | 17.43 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 99 | 17.45 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 111 | 17.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 125 | 17.47 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 126 | 17.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 204 | 17.53 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 252 | 17.56 | temperature | 10 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 266 | 17.57 | wind | 9 | 43200 | < th | dose dependent | sin | 6 | NA |
| 294 | 17.59 | wind | 1 | 43200 | > th | dose dependent | sin | 6 | NA |
| 387 | 17.66 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 401 | 17.67 | wind | 3 | 43200 | > th | dose independent | sin | 6 | NA |
| 461 | 17.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 482 | 17.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 590 | 17.75 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 674 | 17.77 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 704 | 17.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 738 | 17.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 739 | 17.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 754 | 17.79 | temperature | 10 | 14400 | > th | dose dependent | sin | 20 | NA |
| 787 | 17.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 860 | 17.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 877 | 17.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 17 |