Os02g0552000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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Os02g0552000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.33 | 0.388 | 10.6 | 1.1 | 0.602 | -0.658 | -0.396 | 0.62 | 0.383 | 1.92 | 25.3 | 1340 | -- | -- |
| 68.55 | 0.386 | 10.6 | 0.955 | 0.616 | -0.686 | -0.282 | -- | 0.328 | 1.79 | 25.75 | 1272 | -- | -- |
| 68.32 | 0.385 | 10.6 | 1.13 | 0.612 | -0.703 | -- | 0.703 | 0.375 | 1.77 | 25.73 | 1304 | -- | -- |
| 68.76 | 0.386 | 10.6 | 0.935 | 0.608 | -0.656 | -- | -- | 0.317 | 1.76 | 25.7 | 1303 | -- | -- |
| 81.65 | 0.423 | 10.6 | 0.797 | -- | -0.368 | -- | -0.152 | 0.215 | -- | 25.73 | 1304 | -- | -- |
| 79.69 | 0.418 | 10.6 | 0.719 | 0.513 | -- | -0.369 | -- | 0.105 | 1.81 | -- | -- | -- | -- |
| 80.21 | 0.419 | 10.6 | 0.731 | 0.512 | -- | -- | -- | 0.107 | 1.72 | -- | -- | -- | -- |
| 81.74 | 0.423 | 10.6 | 0.831 | -- | -0.372 | -- | -- | 0.224 | -- | 25.73 | 1304 | -- | -- |
| 89.7 | 0.441 | 10.6 | -- | 0.631 | -0.39 | -- | -- | 0.153 | 1.5 | 25.42 | 1068 | -- | -- |
| 96.14 | 0.458 | 10.6 | 0.752 | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
| 94.3 | 0.454 | 10.7 | -- | 0.525 | -- | -- | -- | 0.026 | 1.76 | -- | -- | -- | -- |
| 98.04 | 0.463 | 10.6 | -- | -- | -0.367 | -- | -- | 0.191 | -- | 25.42 | 1068 | -- | -- |
| 111.05 | 0.492 | 10.6 | -- | -- | -- | -- | -- | 0.0354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 6 | 67.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 34 | 68.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 46 | 68.52 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 58 | 68.56 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 65 | 68.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 106 | 68.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 146 | 68.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 148 | 68.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 181 | 68.89 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 191 | 68.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 205 | 68.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 232 | 68.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 255 | 69.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 278 | 69.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 326 | 69.19 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 353 | 69.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 363 | 69.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 373 | 69.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 428 | 69.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 488 | 69.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 540 | 69.46 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 548 | 69.47 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 556 | 69.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 559 | 69.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 593 | 69.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 649 | 69.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 715 | 69.61 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 779 | 69.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 804 | 69.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 840 | 69.73 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 17 |
| 882 | 69.76 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 886 | 69.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 952 | 69.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 965 | 69.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 981 | 69.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 995 | 69.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |