Os02g0551400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os02g0551400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.2 | 0.183 | 10.3 | 0.776 | 0.276 | -0.118 | 0.0435 | 1.04 | 0.222 | 1.63 | 21.9 | 1741 | -- | -- |
| 16.81 | 0.191 | 10.3 | 0.657 | 0.252 | -0.355 | 0.00481 | -- | 0.191 | 2.09 | 18.1 | 9455 | -- | -- |
| 15.09 | 0.181 | 10.3 | 0.786 | 0.276 | -0.145 | -- | 1.03 | 0.23 | 1.65 | 22.2 | 1529 | -- | -- |
| 16.17 | 0.187 | 10.3 | 0.627 | 0.28 | -0.508 | -- | -- | 0.169 | 1.71 | 16.79 | 8274 | -- | -- |
| 19.73 | 0.207 | 10.3 | 0.788 | -- | -0.137 | -- | 1.02 | 0.234 | -- | 22.3 | 1597 | -- | -- |
| 18.47 | 0.201 | 10.3 | 0.391 | 0.272 | -- | 0.0369 | -- | 0.0973 | 1.68 | -- | -- | -- | -- |
| 18.47 | 0.201 | 10.3 | 0.389 | 0.272 | -- | -- | -- | 0.097 | 1.7 | -- | -- | -- | -- |
| 20.82 | 0.213 | 10.3 | 0.621 | -- | -0.483 | -- | -- | 0.165 | -- | 16.44 | 8822 | -- | -- |
| 21.96 | 0.218 | 10.3 | -- | 0.277 | 0.128 | -- | -- | 0.0314 | 1.71 | 20 | 6197 | -- | -- |
| 22.97 | 0.224 | 10.3 | 0.4 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 22.47 | 0.222 | 10.3 | -- | 0.279 | -- | -- | -- | 0.0537 | 1.74 | -- | -- | -- | -- |
| 24.25 | 0.229 | 10.3 | -- | -- | 0.251 | -- | -- | -0.0291 | -- | 22.03 | 47520 | -- | -- |
| 27.2 | 0.243 | 10.3 | -- | -- | -- | -- | -- | 0.0587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 5 | 15.12 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 9 | 15.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 10 | 15.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 14 | 15.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 15 | 15.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 17 | 15.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 21 | 15.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 25 | 15.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 47 | 15.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 75 | 15.26 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 78 | 15.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 80 | 15.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 82 | 15.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 93 | 15.27 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 95 | 15.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 97 | 15.27 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 120 | 15.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 181 | 15.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 188 | 15.30 | humidity | 90 | 14400 | > th | dose dependent | sin | 8 | NA |
| 203 | 15.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 250 | 15.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 255 | 15.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 281 | 15.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 282 | 15.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 302 | 15.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 343 | 15.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 346 | 15.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 392 | 15.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 397 | 15.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 398 | 15.34 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 402 | 15.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 430 | 15.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 453 | 15.35 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 455 | 15.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 473 | 15.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 537 | 15.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 565 | 15.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 583 | 15.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 651 | 15.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 660 | 15.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 681 | 15.38 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 683 | 15.38 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 687 | 15.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 715 | 15.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 740 | 15.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 761 | 15.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 770 | 15.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 774 | 15.39 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 871 | 15.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |