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Os02g0550400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0154) R2 : 0.531
β1 : 1.22 (0.0563) R2dD : 0.503 R2D : 0.374
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.351 (0.0328) R2dN8 : 0.157 R2N8 : 0.0276
σ : 0.289
deviance : 38.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.1 0.258 11.8 1.33 0.257 0.732 0.102 0.453 0.379 21.6 7.176 673 -- --
30.08 0.255 11.8 1.31 0.27 0.664 0.0996 -- 0.384 21.5 7.4 697 -- --
30.08 0.255 11.8 1.32 0.272 0.791 -- 0.664 0.383 21.5 7.402 671 -- --
30.12 0.256 11.8 1.31 0.27 0.652 -- -- 0.385 21.6 7.432 692 -- --
33.59 0.27 11.8 1.35 -- 1 -- 0.959 0.385 -- 7.1 657 -- --
32.34 0.267 11.8 1.22 0.313 -- 0.00194 -- 0.351 21.6 -- -- -- --
32.34 0.266 11.8 1.22 0.313 -- -- -- 0.351 21.6 -- -- -- --
33.84 0.271 11.8 1.35 -- 0.816 -- -- 0.39 -- 6.952 672 -- --
67.34 0.382 11.8 -- 0.319 -0.478 -- -- 0.188 22.2 6.025 4153 -- --
38.13 0.289 11.8 1.22 -- -- -- -- 0.351 -- -- -- -- --
71.6 0.396 11.8 -- 0.316 -- -- -- 0.216 21.9 -- -- -- --
52.84 0.339 11.8 -- -- -0.897 -- -- 0.115 -- 7.425 32868 -- --
77.57 0.411 11.8 -- -- -- -- -- 0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.34 wind 7.0 720 < th dose independent rect. 15 4
2 28.50 wind 7.0 720 < th dose independent rect. 17 1
6 28.82 wind 7.0 720 < th dose independent rect. 13 15
8 28.83 wind 7.0 720 < th dose independent rect. 15 12
10 28.88 wind 7.0 720 < th dose independent rect. 7 20
17 29.01 wind 7.0 720 < th dose independent rect. 15 19
18 29.01 wind 9.0 720 < th dose independent rect. 6 23
21 29.08 wind 7.0 720 < th dose independent rect. 16 9
23 29.09 wind 7.0 720 < th dose independent rect. 7 12
26 29.14 wind 7.0 720 < th dose independent rect. 6 14
28 29.15 atmosphere 995.0 30 > th dose dependent rect. 5 13
31 29.16 wind 7.0 720 < th dose independent rect. 22 21
32 29.17 radiation 1.0 1440 > th dose independent rect. 9 3
40 29.23 wind 7.0 720 < th dose independent rect. 8 10
51 29.28 radiation 1.0 720 < th dose dependent rect. 5 12
52 29.28 radiation 1.0 720 < th dose dependent rect. 4 14
56 29.33 wind 5.0 90 < th dose independent rect. 7 22
61 29.37 atmosphere 1000.0 30 > th dose independent rect. 5 13
68 29.43 wind 7.0 720 < th dose independent rect. 13 23
75 29.47 radiation 1.0 1440 < th dose dependent rect. 11 7
77 29.48 wind 5.0 30 < th dose independent rect. 18 11
97 29.54 radiation 1.0 720 < th dose independent rect. 5 18
103 29.55 wind 7.0 720 > th dose independent rect. 13 10
116 29.58 radiation 1.0 720 > th dose independent rect. 17 1
125 29.59 humidity 50.0 30 > th dose dependent rect. 5 13
126 29.59 radiation 1.0 720 < th dose dependent rect. 5 18
127 29.59 radiation 1.0 720 < th dose dependent rect. 20 21
136 29.61 humidity 80.0 43200 > th dose dependent rect. 20 4
137 29.61 humidity 80.0 43200 > th dose dependent rect. 18 7
142 29.63 radiation 1.0 1440 < th dose independent rect. 9 4
149 29.63 radiation 1.0 1440 < th dose dependent rect. 9 4
154 29.64 humidity 90.0 1440 > th dose dependent rect. 20 1
155 29.64 humidity 80.0 43200 > th dose dependent rect. 21 2
163 29.65 atmosphere 995.0 720 > th dose dependent rect. 5 1
174 29.66 radiation 1.0 720 > th dose independent rect. 16 20
181 29.68 radiation 1.0 720 < th dose independent rect. 4 13
201 29.70 radiation 1.0 1440 < th dose independent rect. 11 2
210 29.70 radiation 1.0 1440 < th dose dependent rect. 11 2
214 29.71 wind 7.0 720 > th dose independent sin 16 NA
236 29.72 atmosphere 995.0 720 > th dose dependent rect. 4 3
242 29.73 humidity 80.0 90 > th dose dependent rect. 5 2
257 29.75 radiation 20.0 1440 < th dose independent rect. 13 1
285 29.77 humidity 70.0 1440 > th dose independent rect. 13 1
293 29.78 radiation 20.0 1440 > th dose independent rect. 13 1
308 29.79 temperature 25.0 720 > th dose dependent rect. 17 1
313 29.79 temperature 10.0 30 > th dose dependent rect. 8 21
318 29.80 radiation 20.0 14400 < th dose independent rect. 19 11
326 29.80 atmosphere 1010.0 90 < th dose dependent rect. 8 6
327 29.80 wind 7.0 720 > th dose dependent rect. 13 12
330 29.80 wind 9.0 90 < th dose dependent rect. 7 22
341 29.81 wind 7.0 720 > th dose dependent rect. 13 10
366 29.83 humidity 80.0 43200 > th dose dependent sin 15 NA
378 29.83 radiation 1.0 1440 < th dose dependent rect. 11 14
389 29.84 temperature 30.0 30 < th dose independent rect. 5 13
391 29.84 wind 7.0 720 < th dose independent rect. 11 16
407 29.85 wind 7.0 720 < th dose independent sin 17 NA
409 29.85 radiation 1.0 1440 > th dose independent rect. 11 7
432 29.86 wind 7.0 720 < th dose independent rect. 11 8
459 29.87 atmosphere 1000.0 720 > th dose independent rect. 5 1
462 29.87 temperature 25.0 1440 > th dose independent rect. 19 6
463 29.87 temperature 25.0 270 < th dose independent rect. 10 20
464 29.87 wind 7.0 720 > th dose dependent rect. 15 1
479 29.88 radiation 1.0 1440 < th dose independent rect. 11 7
485 29.88 humidity 90.0 720 > th dose dependent rect. 20 5
497 29.89 temperature 25.0 1440 > th dose independent rect. 18 8
499 29.89 temperature 25.0 720 > th dose independent rect. 17 19
510 29.89 temperature 30.0 30 < th dose dependent rect. 5 13
522 29.90 radiation 1.0 720 > th dose independent rect. 16 14
549 29.91 radiation 1.0 720 < th dose independent rect. 20 21
550 29.91 wind 7.0 720 > th dose dependent sin 16 NA
552 29.91 radiation 1.0 1440 < th dose dependent sin 21 NA
556 29.91 atmosphere 1015.0 90 < th dose dependent rect. 8 13
578 29.93 wind 9.0 1440 < th dose independent rect. 6 4
607 29.93 humidity 90.0 30 > th dose dependent rect. 5 21
611 29.94 humidity 60.0 14400 > th dose independent rect. 20 10
633 29.94 humidity 50.0 10 > th dose dependent rect. 12 20
651 29.95 wind 9.0 720 < th dose dependent rect. 17 1
652 29.95 atmosphere 1010.0 270 < th dose dependent rect. 9 1
663 29.95 humidity 50.0 720 > th dose dependent rect. 19 12
679 29.96 radiation 10.0 90 < th dose dependent rect. 5 2
680 29.96 wind 7.0 720 > th dose dependent rect. 14 3
700 29.97 radiation 1.0 720 > th dose independent rect. 13 23
708 29.97 atmosphere 1015.0 30 < th dose dependent rect. 8 21
710 29.98 wind 7.0 720 > th dose independent rect. 17 1
711 29.98 humidity 80.0 43200 < th dose independent rect. 6 2
731 29.98 atmosphere 1015.0 10 < th dose dependent rect. 8 14
773 30.00 humidity 70.0 1440 < th dose independent rect. 13 2
776 30.00 temperature 25.0 1440 < th dose independent rect. 19 7
793 30.00 radiation 40.0 90 < th dose dependent rect. 5 12
807 30.01 precipitation 0.1 1440 < th dose independent rect. 4 14
808 30.01 radiation 1.0 1440 > th dose independent rect. 11 19
809 30.01 radiation 1.0 1440 < th dose independent rect. 11 19
813 30.01 radiation 20.0 1440 < th dose dependent rect. 13 1
817 30.01 radiation 30.0 4320 < th dose dependent rect. 19 10
821 30.01 precipitation 0.1 1440 < th dose dependent rect. 4 14
843 30.02 precipitation 0.1 720 < th dose independent rect. 16 18
861 30.02 precipitation 0.1 720 < th dose dependent rect. 16 18
867 30.03 humidity 90.0 43200 < th dose independent rect. 20 7
869 30.03 humidity 90.0 43200 < th dose independent rect. 19 9
872 30.03 precipitation 0.1 1440 > th dose independent rect. 4 14
889 30.04 wind 5.0 720 > th dose independent rect. 21 1
892 30.04 humidity 90.0 90 > th dose independent rect. 5 2
916 30.04 wind 9.0 720 < th dose dependent rect. 15 4
920 30.04 wind 5.0 720 > th dose dependent rect. 17 6
933 30.05 temperature 25.0 720 > th dose independent rect. 17 2
954 30.05 radiation 1.0 720 < th dose independent rect. 1 23
960 30.05 wind 9.0 30 < th dose dependent rect. 18 11
965 30.05 humidity 90.0 270 > th dose dependent rect. 17 14
969 30.05 humidity 90.0 270 > th dose dependent rect. 13 18
973 30.05 humidity 90.0 270 > th dose dependent rect. 3 23
993 30.06 radiation 1.0 720 > th dose independent rect. 7 23