Os02g0549800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0549800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 303.6 | 0.819 | 4.26 | 0.748 | 0.372 | -0.786 | -0.188 | -2.86 | -0.206 | 5.73 | 24.74 | 1540 | -- | -- |
| 319.23 | 0.832 | 4.3 | 0.16 | 0.483 | -0.731 | -0.219 | -- | -0.249 | 6.31 | 25.86 | 1535 | -- | -- |
| 303.68 | 0.812 | 4.26 | 0.745 | 0.371 | -0.787 | -- | -2.85 | -0.206 | 5.72 | 24.74 | 1540 | -- | -- |
| 315.81 | 0.828 | 4.33 | 0.148 | 0.361 | -0.768 | -- | -- | -0.338 | 5.14 | 24.7 | 1509 | -- | -- |
| 310.28 | 0.82 | 4.27 | 0.749 | -- | -0.801 | -- | -2.81 | -0.206 | -- | 24.8 | 1450 | -- | -- |
| 340.38 | 0.865 | 4.29 | 0.209 | 0.393 | -- | -0.137 | -- | -0.15 | 5.61 | -- | -- | -- | -- |
| 340.43 | 0.864 | 4.29 | 0.208 | 0.393 | -- | -- | -- | -0.15 | 5.6 | -- | -- | -- | -- |
| 318.79 | 0.832 | 4.37 | -0.109 | -- | -0.973 | -- | -- | -0.483 | -- | 24.9 | 1383 | -- | -- |
| 313.54 | 0.825 | 4.34 | -- | 0.363 | -0.898 | -- | -- | -0.422 | 5.9 | 24.7 | 1539 | -- | -- |
| 348.43 | 0.872 | 4.29 | 0.221 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 341.57 | 0.865 | 4.29 | -- | 0.396 | -- | -- | -- | -0.173 | 5.57 | -- | -- | -- | -- |
| 319.05 | 0.832 | 4.36 | -- | -- | -0.954 | -- | -- | -0.46 | -- | 24.9 | 1385 | -- | -- |
| 349.72 | 0.873 | 4.3 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 299.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 3 | 299.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 5 | 300.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 22 | 301.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 28 | 301.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 29 | 301.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 30 | 301.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 34 | 302.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 42 | 302.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 55 | 302.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 93 | 303.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 109 | 303.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 20 | NA |
| 113 | 303.25 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 134 | 303.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 189 | 303.76 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 208 | 303.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 209 | 303.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 261 | 304.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 269 | 304.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 297 | 304.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 308 | 304.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 321 | 304.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 373 | 304.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 391 | 304.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 432 | 304.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 460 | 304.96 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 461 | 304.96 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 497 | 305.09 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 518 | 305.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 618 | 305.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 623 | 305.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 653 | 305.48 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 713 | 305.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 714 | 305.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 865 | 305.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 871 | 306.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 877 | 306.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 880 | 306.01 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 895 | 306.04 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 992 | 306.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |