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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0549200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ser Thr specific protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.69 (0.0668) R2 : 0.6
β1 : -5.98 (0.249) R2dD : 0.545 R2D : 0.314
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.73 (0.254) R2dE : 0.107 R2E : 0.000521
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.61 (0.143) R2dN8 : 0.15 R2N8 : 0.0496
σ : 1.25
deviance : 717.72
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 76.49
memory length : 1208
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
695 1.24 5.73 -6.17 0.196 2.88 2.28 -2.86 -1.65 3.88 77.09 1196 -- --
703.92 1.24 5.69 -5.96 0.161 2.65 2.13 -- -1.6 4.49 76.54 1196 -- --
706.24 1.24 5.75 -6.16 0.41 2.81 -- -2.69 -1.62 1.19 76 1263 -- --
710.76 1.24 5.7 -5.97 0.379 2.56 -- -- -1.61 0.382 75.96 1245 -- --
711.8 1.24 5.73 -6.16 -- 2.93 -- -2.24 -1.64 -- 76.98 1212 -- --
852.36 1.37 5.73 -5.45 0.786 -- 1.51 -- -1.76 1.45 -- -- -- --
860.48 1.37 5.74 -5.5 0.789 -- -- -- -1.77 0.768 -- -- -- --
717.72 1.25 5.69 -5.98 -- 2.73 -- -- -1.61 -- 76.49 1208 -- --
1578.52 1.85 5.63 -- 0.373 2.21 -- -- -1.32 23.5 94 2643 -- --
899.44 1.4 5.72 -5.47 -- -- -- -- -1.75 -- -- -- -- --
1656.74 1.9 5.6 -- 0.706 -- -- -- -1.16 0.411 -- -- -- --
1587.45 1.86 5.63 -- -- 2.43 -- -- -1.32 -- 94 2596 -- --
1688.09 1.92 5.59 -- -- -- -- -- -1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 703.61 radiation 20 1440 < th dose independent rect. 16 12
2 703.80 radiation 20 1440 < th dose independent rect. 16 1
6 704.64 radiation 20 1440 < th dose independent rect. 16 9
10 704.96 radiation 20 1440 < th dose independent rect. 16 5
15 707.52 humidity 70 720 > th dose independent sin 12 NA
16 707.79 radiation 20 1440 > th dose independent rect. 16 15
17 708.07 radiation 20 1440 > th dose independent rect. 16 1
32 709.02 humidity 70 720 > th dose independent rect. 16 10
33 709.38 humidity 60 1440 > th dose independent rect. 12 7
34 709.86 humidity 80 1440 < th dose dependent rect. 11 10
36 710.10 humidity 60 1440 > th dose independent rect. 12 16
39 710.17 humidity 60 1440 > th dose independent rect. 12 13
40 710.17 humidity 60 1440 > th dose independent rect. 12 20
45 710.21 humidity 60 1440 > th dose independent sin 16 NA
48 710.24 humidity 60 1440 > th dose independent rect. 12 11
49 710.24 humidity 80 1440 < th dose dependent rect. 7 14
59 710.58 humidity 80 1440 < th dose dependent rect. 11 22
69 710.82 humidity 80 1440 < th dose dependent sin 20 NA
91 711.05 humidity 70 720 > th dose independent rect. 15 16
103 711.32 humidity 70 1440 < th dose dependent rect. 14 5
135 711.79 humidity 80 1440 < th dose dependent rect. 13 8
144 711.92 humidity 70 1440 < th dose dependent sin 15 NA
155 712.02 humidity 60 1440 < th dose independent rect. 12 7
164 712.06 humidity 70 1440 < th dose dependent rect. 14 18
268 712.98 humidity 70 720 < th dose independent sin 12 NA
286 713.21 humidity 60 1440 < th dose independent sin 16 NA
291 713.27 humidity 80 1440 < th dose dependent no NA NA
292 713.28 humidity 80 1440 < th dose dependent rect. 15 23
298 713.35 humidity 70 1440 < th dose dependent rect. 16 1
300 713.36 humidity 80 1440 < th dose dependent rect. 20 23
323 713.72 radiation 10 1440 > th dose independent rect. 11 20
359 714.07 radiation 10 1440 > th dose independent rect. 11 22
460 715.11 humidity 70 1440 < th dose independent rect. 17 15
502 715.72 humidity 70 1440 < th dose independent rect. 18 1
523 716.22 humidity 70 1440 < th dose independent rect. 17 3
592 717.46 temperature 25 720 > th dose dependent rect. 16 7
631 718.59 temperature 25 720 > th dose dependent sin 14 NA
670 719.16 temperature 25 720 > th dose dependent rect. 17 2
745 719.67 radiation 10 1440 < th dose dependent rect. 11 7
761 719.72 temperature 25 720 > th dose dependent rect. 16 16
764 719.78 humidity 60 1440 > th dose independent rect. 24 19
765 719.78 humidity 60 1440 > th dose independent rect. 22 21
777 719.83 humidity 60 1440 > th dose independent rect. 7 12
779 719.83 humidity 60 1440 > th dose independent rect. 2 17
797 719.98 humidity 50 1440 > th dose dependent rect. 11 8
810 720.27 radiation 10 1440 > th dose dependent rect. 16 1
825 720.53 humidity 60 1440 > th dose independent rect. 7 21
832 720.56 humidity 60 1440 > th dose independent rect. 14 23
844 720.60 humidity 60 1440 > th dose independent rect. 2 23
851 720.62 humidity 60 1440 > th dose independent no NA NA
891 720.68 radiation 10 1440 > th dose dependent rect. 16 15
934 721.08 radiation 10 1440 > th dose independent sin 13 NA
950 721.17 radiation 10 1440 < th dose dependent rect. 11 17
974 721.26 humidity 50 1440 > th dose dependent rect. 11 10
990 721.31 radiation 10 1440 < th dose dependent rect. 11 14
999 721.41 radiation 10 1440 < th dose dependent rect. 11 19