Os02g0548700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os02g0548700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.25 | 0.405 | 8.7 | 0.863 | 0.974 | -1.2 | 1.19 | 0.302 | 0.274 | 6.2 | 22.2 | 1478 | -- | -- |
| 74.48 | 0.402 | 8.71 | 0.776 | 0.978 | -1.19 | 1.19 | -- | 0.254 | 6.18 | 22.29 | 1478 | -- | -- |
| 77.71 | 0.411 | 8.7 | 0.888 | 0.98 | -1.2 | -- | 0.342 | 0.273 | 6.11 | 22.22 | 1477 | -- | -- |
| 77.99 | 0.411 | 8.72 | 0.774 | 0.982 | -1.2 | -- | -- | 0.244 | 6.11 | 22.28 | 1466 | -- | -- |
| 122.65 | 0.516 | 8.72 | 0.955 | -- | -1.22 | -- | 0.293 | 0.312 | -- | 22.26 | 1928 | -- | -- |
| 128.48 | 0.531 | 8.8 | 0.329 | 0.941 | -- | 1.19 | -- | -0.155 | 6.32 | -- | -- | -- | -- |
| 131.99 | 0.538 | 8.81 | 0.343 | 0.947 | -- | -- | -- | -0.159 | 6.26 | -- | -- | -- | -- |
| 122.86 | 0.516 | 8.73 | 0.867 | -- | -1.23 | -- | -- | 0.286 | -- | 22.26 | 1946 | -- | -- |
| 92.2 | 0.447 | 8.74 | -- | 1.01 | -0.995 | -- | -- | 0.114 | 6.03 | 22.31 | 1402 | -- | -- |
| 178.49 | 0.624 | 8.82 | 0.369 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 135.09 | 0.544 | 8.82 | -- | 0.952 | -- | -- | -- | -0.198 | 6.24 | -- | -- | -- | -- |
| 131.11 | 0.533 | 8.75 | -- | -- | -0.954 | -- | -- | 0.168 | -- | 22.11 | 559 | -- | -- |
| 182.07 | 0.63 | 8.83 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 19 | 75.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 22 | 75.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 40 | 76.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 43 | 76.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 45 | 76.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 46 | 76.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 108 | 76.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 110 | 76.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 139 | 76.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 221 | 77.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 276 | 77.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 284 | 77.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 305 | 77.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 316 | 77.44 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 401 | 77.83 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 576 | 78.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 619 | 78.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 680 | 79.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 716 | 79.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 720 | 79.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 751 | 79.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 765 | 79.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 772 | 79.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 839 | 79.84 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 880 | 79.93 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 887 | 79.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 937 | 80.08 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 964 | 80.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |