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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0547100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0438) R2 : 0.118
β1 : 0.644 (0.175) R2dD : 0.0345 R2D : -0.0402
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.45 (0.444) R2dE : 0.196 R2E : -0.268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.5 (2.65) R2dD*E : 0.396 R2D*E : -0.0923
γ1 : -0.0318 (0.0907) R2dN8 : 0.000409 R2N8 : -0.0126
σ : 0.79
deviance : 287.68
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.7714
memory length : 88
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.03
open length of G : 1.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
272.94 0.776 3.44 0.743 0.488 -2.39 -0.0597 20 -0.0402 10.9 0.9658 89 4.02 1.03
309.53 0.819 3.54 0.0287 0.503 -0.61 0.0333 -- -0.0466 10.8 1.2 2 5.38 1.22
272.95 0.769 3.44 0.735 0.488 -2.41 -- 20.1 -0.0393 10.9 0.9343 88 4.02 1.03
309.24 0.819 3.55 0.0518 0.51 -0.647 -- -- -0.0492 10.5 1.2 4 5.38 1.15
287.68 0.79 3.46 0.644 -- -2.45 -- 20.5 -0.0318 -- 0.7714 88 4.03 1.05
310.51 0.826 3.54 0.0477 0.501 -- 0.047 -- -0.0387 10.7 -- -- -- --
310.52 0.825 3.54 0.0498 0.5 -- -- -- -0.0384 10.8 -- -- -- --
325.09 0.84 3.56 0.0421 -- -0.512 -- -- -0.0486 -- 1.2 6 5.38 1.28
309.26 0.819 3.55 -- 0.511 -0.618 -- -- -0.0557 10.5 1.247 6 5.36 1.18
325.99 0.844 3.56 0.0397 -- -- -- -- -0.0414 -- -- -- -- --
310.58 0.824 3.54 -- 0.5 -- -- -- -0.044 10.8 -- -- -- --
324.89 0.839 3.56 -- -- -0.511 -- -- -0.0555 -- 1.21 5 5.38 2.85
326.03 0.843 3.56 -- -- -- -- -- -0.0458 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 273.52 wind 1 90 < th dose dependent rect. 4 1
2 275.93 wind 1 90 < th dose independent rect. 4 1
4 286.68 temperature 30 90 < th dose dependent rect. 10 21
5 287.29 wind 1 90 < th dose dependent rect. 4 9
7 287.52 wind 1 90 < th dose dependent rect. 4 17
8 287.94 wind 1 90 < th dose dependent rect. 4 12
22 289.03 temperature 30 270 < th dose dependent rect. 8 22
40 290.71 temperature 30 90 < th dose dependent rect. 17 20
45 291.00 temperature 30 10 < th dose dependent rect. 17 21
46 291.01 wind 1 90 < th dose dependent rect. 4 19
60 291.24 temperature 15 10 > th dose dependent rect. 7 23
62 291.31 atmosphere 1000 30 > th dose dependent rect. 11 20
73 291.53 temperature 30 270 < th dose dependent rect. 21 22
75 291.60 temperature 30 270 < th dose dependent rect. 22 14
80 291.84 temperature 30 720 < th dose dependent rect. 17 19
129 292.71 temperature 30 90 < th dose dependent no NA NA
138 292.78 temperature 30 90 < th dose dependent rect. 19 18
140 292.79 temperature 30 90 < th dose dependent rect. 11 2
157 292.87 temperature 20 90 > th dose independent sin 0 NA
158 292.87 temperature 30 30 < th dose dependent rect. 3 23
160 292.90 temperature 20 90 < th dose independent rect. 3 18
165 292.93 temperature 10 270 > th dose dependent rect. 12 23
188 293.14 temperature 20 90 < th dose independent sin 0 NA
193 293.17 temperature 30 90 < th dose dependent rect. 16 15
204 293.27 atmosphere 1005 90 > th dose dependent rect. 5 1
207 293.28 atmosphere 1005 30 > th dose dependent rect. 11 1
209 293.29 temperature 20 270 < th dose independent rect. 2 3
210 293.29 atmosphere 1005 30 > th dose dependent rect. 11 10
222 293.34 temperature 30 10 < th dose dependent rect. 1 23
232 293.40 temperature 25 10 < th dose dependent sin 3 NA
261 293.53 wind 1 1440 > th dose independent rect. 15 7
267 293.54 temperature 15 90 > th dose dependent rect. 14 23
276 293.61 wind 1 14400 > th dose independent rect. 15 8
277 293.61 temperature 10 720 > th dose dependent rect. 21 14
282 293.64 temperature 20 90 < th dose independent rect. 1 20
290 293.69 atmosphere 1005 30 > th dose dependent rect. 11 4
304 293.75 temperature 30 10 < th dose dependent rect. 17 15
313 293.80 temperature 20 10 < th dose dependent sin 23 NA
316 293.82 temperature 10 270 > th dose dependent rect. 4 23
328 293.85 temperature 10 720 > th dose dependent rect. 21 22
338 293.90 temperature 30 10 < th dose dependent rect. 23 23
347 293.96 temperature 30 10 < th dose dependent sin 6 NA
352 293.97 temperature 15 30 > th dose dependent rect. 7 13
357 293.98 temperature 25 1440 < th dose independent rect. 20 1
362 294.01 wind 1 90 < th dose dependent sin 3 NA
375 294.04 temperature 20 90 < th dose independent rect. 5 2
377 294.04 temperature 20 270 > th dose independent rect. 12 22
389 294.10 temperature 30 720 < th dose dependent sin 9 NA
398 294.12 temperature 25 1440 < th dose independent rect. 18 4
429 294.19 temperature 20 1440 > th dose dependent rect. 19 2
438 294.22 atmosphere 1000 30 > th dose dependent rect. 11 15
442 294.22 temperature 20 10 > th dose dependent rect. 14 23
457 294.28 temperature 20 90 < th dose independent rect. 3 5
459 294.28 temperature 25 10 < th dose dependent rect. 24 20
463 294.30 temperature 30 90 < th dose dependent rect. 10 11
474 294.32 temperature 15 30 > th dose dependent rect. 7 15
475 294.32 temperature 20 270 > th dose dependent rect. 14 21
534 294.44 temperature 20 10 < th dose independent sin 0 NA
555 294.50 temperature 15 30 > th dose dependent no NA NA
588 294.58 temperature 20 270 > th dose independent rect. 23 11
634 294.66 temperature 15 10 > th dose dependent rect. 2 23
635 294.67 temperature 25 1440 > th dose independent rect. 18 4
672 294.74 temperature 10 1440 > th dose dependent rect. 19 2
680 294.77 temperature 30 1440 < th dose dependent rect. 19 2
709 294.84 wind 1 1440 < th dose independent rect. 15 7
751 294.91 temperature 10 720 > th dose dependent rect. 15 19
770 294.94 temperature 15 10 > th dose dependent rect. 21 23
790 294.97 temperature 25 10 < th dose dependent rect. 24 13
831 295.04 temperature 20 10 > th dose independent rect. 24 11
899 295.14 temperature 25 10 < th dose dependent rect. 4 9
908 295.15 temperature 10 720 > th dose dependent rect. 18 16
928 295.18 temperature 20 10 > th dose independent rect. 2 9
935 295.19 temperature 25 1440 > th dose independent rect. 20 1
945 295.20 humidity 70 4320 < th dose dependent rect. 18 3
967 295.21 temperature 30 30 < th dose dependent rect. 5 23