Os02g0546700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0546700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.26 | 0.748 | 10.8 | 0.814 | 0.743 | -1.28 | -0.623 | -1.47 | -0.301 | 1.95 | 21.4 | 939 | -- | -- |
| 257.61 | 0.748 | 10.7 | 1.13 | 0.734 | -1.13 | -0.88 | -- | -0.192 | 1.89 | 22.06 | 978 | -- | -- |
| 254.57 | 0.743 | 10.8 | 0.781 | 0.746 | -1.28 | -- | -1.65 | -0.312 | 2.17 | 21.4 | 952 | -- | -- |
| 260.06 | 0.751 | 10.7 | 1.15 | 0.752 | -1.11 | -- | -- | -0.193 | 2.32 | 22.03 | 998 | -- | -- |
| 286.73 | 0.789 | 10.8 | 0.798 | -- | -1.1 | -- | -1.47 | -0.332 | -- | 21.5 | 824 | -- | -- |
| 307.25 | 0.822 | 10.8 | 0.746 | 0.622 | -- | -0.637 | -- | -0.554 | 2.62 | -- | -- | -- | -- |
| 308.36 | 0.822 | 10.8 | 0.762 | 0.632 | -- | -- | -- | -0.551 | 3.09 | -- | -- | -- | -- |
| 287.5 | 0.79 | 10.7 | 1.22 | -- | -1.11 | -- | -- | -0.191 | -- | 22.04 | 1719 | -- | -- |
| 290.43 | 0.794 | 10.8 | -- | 0.738 | -0.833 | -- | -- | -0.379 | 2.3 | 22.39 | 859 | -- | -- |
| 331.21 | 0.85 | 10.8 | 0.789 | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
| 323.65 | 0.842 | 10.8 | -- | 0.647 | -- | -- | -- | -0.636 | 3.09 | -- | -- | -- | -- |
| 317.81 | 0.83 | 10.8 | -- | -- | -0.717 | -- | -- | -0.401 | -- | 22.3 | 433 | -- | -- |
| 347.61 | 0.87 | 10.8 | -- | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.54 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 5 | 257.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 21 | 258.09 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 26 | 258.29 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 33 | 258.50 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 36 | 258.58 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 39 | 258.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 46 | 258.81 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 49 | 258.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 68 | 259.21 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 87 | 259.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 95 | 259.52 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 104 | 259.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 122 | 259.75 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 131 | 259.86 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 141 | 259.98 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 145 | 260.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 157 | 260.28 | temperature | 25.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 165 | 260.34 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 174 | 260.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 179 | 260.47 | temperature | 20.0 | 720 | > th | dose independent | sin | 6 | NA |
| 185 | 260.55 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 213 | 260.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 215 | 260.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 223 | 260.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 18 |
| 224 | 260.98 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 239 | 261.11 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 260 | 261.23 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 269 | 261.28 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 278 | 261.32 | temperature | 15.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 287 | 261.35 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 305 | 261.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 317 | 261.51 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 326 | 261.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 331 | 261.56 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 334 | 261.56 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 352 | 261.67 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 393 | 261.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 397 | 261.98 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 410 | 262.05 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 19 |
| 427 | 262.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 437 | 262.21 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 482 | 262.51 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 521 | 262.78 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 533 | 262.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 535 | 262.86 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 573 | 263.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 593 | 263.20 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 616 | 263.31 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 627 | 263.36 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 639 | 263.42 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 676 | 263.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 727 | 263.84 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 776 | 264.09 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 832 | 264.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 846 | 264.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 848 | 264.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 875 | 264.61 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 925 | 264.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 927 | 264.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 942 | 264.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |