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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0543800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.7 (0.0294) R2 : 0.00115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0447 (0.0618) R2dN8 : 0.00148 R2N8 : 0.00115
σ : 0.553
deviance : 140.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.34 0.549 2.75 -0.516 0.115 0.858 0.159 -6.61 0.0528 5.85 30.4 103 -- --
139.76 0.555 2.7 -0.0226 0.0822 0.0524 0.232 -- 0.046 5.5 30.4 103 -- --
136.39 0.544 2.75 -0.518 0.114 0.853 -- -6.67 0.0515 6.24 30.4 103 -- --
139.53 0.55 2.69 -0.0174 0.112 0.128 -- -- 0.0581 6.05 30.3 103 -- --
136.99 0.545 2.75 -0.506 -- 0.796 -- -6.63 0.0497 -- 30.4 103 -- --
139.83 0.554 2.7 -0.0182 0.0764 -- 0.19 -- 0.0421 5.83 -- -- -- --
139.87 0.554 2.7 -0.0161 0.0821 -- -- -- 0.0416 7.1 -- -- -- --
140.06 0.551 2.7 -0.00206 -- -0.136 -- -- 0.0301 -- 33.3 280 -- --
139.54 0.55 2.69 -- 0.109 0.118 -- -- 0.054 6.45 30.32 103 -- --
140.23 0.553 2.7 -0.0145 -- -- -- -- 0.0431 -- -- -- -- --
139.88 0.553 2.7 -- 0.082 -- -- -- 0.0434 7.11 -- -- -- --
139.9 0.551 2.7 -- -- -0.114 -- -- 0.0338 -- 33.29 681 -- --
140.23 0.553 2.7 -- -- -- -- -- 0.0447 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.11 radiation 1.0 270 > th dose independent rect. 4 1
11 129.11 radiation 1.0 270 > th dose dependent rect. 4 1
21 132.14 atmosphere 1005.0 90 > th dose independent rect. 7 1
24 133.22 humidity 90.0 30 < th dose independent rect. 7 2
26 133.32 wind 3.0 10 < th dose independent rect. 7 2
28 133.60 wind 1.0 30 < th dose independent rect. 17 1
39 133.60 wind 1.0 30 < th dose dependent rect. 17 1
66 133.69 wind 1.0 10 > th dose independent rect. 9 22
68 134.03 atmosphere 1000.0 30 > th dose dependent rect. 7 2
70 134.09 humidity 70.0 90 < th dose independent rect. 17 1
72 134.18 wind 3.0 10 < th dose dependent rect. 8 1
75 134.24 humidity 70.0 90 < th dose dependent rect. 17 1
130 134.43 radiation 30.0 10 < th dose independent rect. 7 2
131 134.49 temperature 20.0 30 > th dose independent rect. 7 2
133 134.52 humidity 70.0 30 > th dose independent rect. 7 2
137 134.60 wind 1.0 10 < th dose dependent rect. 1 3
144 134.76 wind 1.0 30 > th dose independent rect. 7 2
163 134.91 temperature 30.0 90 < th dose independent rect. 9 22
183 135.05 radiation 1.0 30 > th dose independent rect. 7 2
203 135.09 humidity 50.0 4320 > th dose independent rect. 8 2
206 135.12 temperature 10.0 1440 > th dose independent rect. 8 2
209 135.12 atmosphere 995.0 1440 > th dose independent rect. 8 2
212 135.12 atmosphere 1015.0 1440 < th dose independent rect. 8 2
213 135.12 temperature 10.0 1440 > th dose independent rect. 10 22
217 135.15 wind 1.0 90 < th dose dependent rect. 14 1
220 135.18 temperature 10.0 30 > th dose independent rect. 7 2
222 135.18 temperature 30.0 30 < th dose independent rect. 7 2
223 135.18 humidity 50.0 30 > th dose independent rect. 7 2
226 135.18 atmosphere 1010.0 30 < th dose independent rect. 7 2
228 135.18 temperature 10.0 30 > th dose independent rect. 9 22
229 135.19 precipitation 0.1 30 < th dose independent rect. 7 2
232 135.19 precipitation 0.1 30 < th dose dependent rect. 7 2
234 135.21 radiation 20.0 10 < th dose dependent rect. 8 1
237 135.26 precipitation 0.1 30 < th dose independent rect. 9 22
239 135.26 precipitation 0.1 30 < th dose dependent rect. 9 22
243 135.29 wind 5.0 30 < th dose independent rect. 15 18
254 135.30 temperature 10.0 30 > th dose dependent rect. 7 2
259 135.35 temperature 30.0 90 > th dose independent rect. 14 2
260 135.36 atmosphere 995.0 30 > th dose independent rect. 9 22
261 135.39 atmosphere 1005.0 90 > th dose dependent rect. 1 1
269 135.44 temperature 30.0 10 < th dose dependent rect. 8 1
271 135.45 wind 9.0 30 < th dose independent rect. 9 22
287 135.52 radiation 40.0 30 < th dose dependent rect. 7 2
289 135.53 temperature 20.0 10 < th dose independent rect. 2 1
303 135.67 humidity 80.0 720 < th dose independent rect. 23 2
329 135.74 wind 1.0 90 < th dose independent rect. 14 1
337 135.75 humidity 70.0 10 > th dose dependent rect. 8 1
342 135.78 humidity 50.0 30 > th dose dependent rect. 7 2
364 135.83 humidity 80.0 720 < th dose dependent rect. 23 2
381 135.85 humidity 50.0 30 > th dose independent rect. 9 22
386 135.87 temperature 30.0 90 < th dose independent rect. 9 8
429 136.00 wind 1.0 10 > th dose independent rect. 21 10
435 136.01 radiation 10.0 30 > th dose dependent rect. 8 1
440 136.03 radiation 10.0 90 < th dose independent rect. 21 14
458 136.07 radiation 10.0 90 < th dose independent rect. 21 12
467 136.09 wind 1.0 30 > th dose dependent rect. 8 1
490 136.12 atmosphere 1015.0 30 < th dose independent rect. 9 22
514 136.15 wind 1.0 270 < th dose independent rect. 5 2
522 136.16 temperature 30.0 90 > th dose dependent rect. 14 1
523 136.16 atmosphere 1015.0 10 < th dose dependent rect. 8 1
564 136.23 wind 5.0 30 < th dose independent rect. 12 21
595 136.29 wind 5.0 30 < th dose independent rect. 17 16
596 136.29 humidity 90.0 30 < th dose dependent rect. 8 1
598 136.30 wind 1.0 10 < th dose independent rect. 1 2
636 136.40 wind 9.0 10 < th dose dependent rect. 15 18
660 136.45 wind 5.0 90 < th dose dependent rect. 14 7
665 136.47 humidity 50.0 720 < th dose dependent rect. 15 1
668 136.49 radiation 1.0 90 > th dose independent rect. 9 21
671 136.50 wind 5.0 30 < th dose independent rect. 7 14
673 136.51 radiation 10.0 90 < th dose independent sin 10 NA
697 136.60 wind 5.0 90 < th dose independent rect. 14 7
700 136.60 wind 9.0 90 < th dose dependent rect. 15 18
709 136.63 humidity 70.0 90 > th dose independent rect. 17 16
710 136.63 temperature 30.0 270 > th dose dependent rect. 8 1
724 136.63 wind 9.0 10 < th dose dependent rect. 17 16
743 136.69 wind 1.0 10 < th dose independent rect. 14 4
747 136.70 humidity 50.0 270 < th dose independent rect. 14 3
776 136.72 wind 1.0 30 > th dose independent rect. 7 14
800 136.73 wind 9.0 30 < th dose dependent rect. 7 14
826 136.76 atmosphere 1000.0 30 > th dose dependent rect. 1 8
890 136.85 temperature 30.0 270 > th dose independent rect. 8 1
904 136.85 wind 9.0 30 < th dose independent rect. 7 14
929 136.87 temperature 10.0 1440 > th dose independent rect. 22 10
932 136.87 temperature 30.0 1440 < th dose independent rect. 22 10
936 136.87 humidity 50.0 1440 > th dose independent rect. 22 10
941 136.87 atmosphere 995.0 1440 > th dose independent rect. 22 10
943 136.87 temperature 10.0 1440 > th dose independent rect. 8 14
947 136.87 temperature 30.0 90 > th dose independent rect. 14 21
953 136.88 precipitation 0.1 30 < th dose independent rect. 7 14
955 136.88 precipitation 0.1 30 < th dose dependent rect. 7 14
956 136.89 temperature 25.0 90 > th dose independent rect. 18 3
957 136.89 wind 9.0 30 < th dose independent rect. 21 10
958 136.89 temperature 10.0 30 > th dose independent rect. 21 10
959 136.89 temperature 30.0 30 < th dose independent rect. 21 10
960 136.89 humidity 50.0 30 > th dose independent rect. 21 10
963 136.89 atmosphere 995.0 30 > th dose independent rect. 21 10
967 136.89 temperature 10.0 30 > th dose independent rect. 7 14
969 136.89 atmosphere 1015.0 30 < th dose independent rect. 7 14
979 136.92 atmosphere 1000.0 30 > th dose independent rect. 7 14
984 136.93 humidity 50.0 270 < th dose dependent sin 12 NA